GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005367-TA|BGIBMGA005367-PA|IPR004582|Checkpoint protein
Rad24
         (142 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   0.54 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   2.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   5.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   5.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                20   8.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 0.54
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 27  AKFSKSNTIKPMIFNIIDQNHIRNFDPVNINDL 59
           + F K    +P +F+ +     RN D  N NDL
Sbjct: 347 SSFGKILATEPTLFSNVTPKFPRNIDEYNNNDL 379


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 8   EPPPQKLKSDVNKQGTSSPAKFSKSNTI 35
           EPP    +S   +    +PA F+ S TI
Sbjct: 612 EPPQWHTRSTEKRVSAGTPAAFNISTTI 639


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 3   DFDETEPPPQKL 14
           DFDE  PPP  L
Sbjct: 315 DFDEFLPPPPNL 326



 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 2   FDFDETEPPPQKLK 15
           FD DE  PPP  ++
Sbjct: 369 FDLDEPLPPPPPIR 382


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 97  VTVLIIAKKHNVK-ITEWITPIDIEFPNDN 125
           +  L +A    +K I  W   I+  FPNDN
Sbjct: 7   IVFLALANGEEIKTIYSW-NVIEYNFPNDN 35


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 37  PMIFNIIDQNHI 48
           P IF  +DQ+HI
Sbjct: 502 PHIFEYVDQDHI 513


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/19 (31%), Positives = 13/19 (68%)

Query: 105 KHNVKITEWITPIDIEFPN 123
           K+N++    ++P +I+ PN
Sbjct: 38  KNNIETKNQLSPFNIDTPN 56


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,726
Number of Sequences: 429
Number of extensions: 1729
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 142
length of database: 140,377
effective HSP length: 52
effective length of query: 90
effective length of database: 118,069
effective search space: 10626210
effective search space used: 10626210
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)