GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005366-TA|BGIBMGA005366-PA|undefined
         (126 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    25   2.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   6.3  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    24   6.3  
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...    24   8.3  

>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 76  YEDLEVRFD--VDYFFINISFTKTLARKRIIALKRSLGSALTQW 117
           +E +E + D  +DY  + + F++ L+   I+AL   + SA  +W
Sbjct: 71  FEIMEPKMDSGIDYQPLRVDFSRDLSYLEILALMDLIVSAEKEW 114


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 73   FRTYEDLEVRFDVDYFFINISFTKTLARKRIIALKRSLGSALTQWMNPM 121
            + T ED  +   +  +    +F   L  + I  L + L SAL QW   M
Sbjct: 4666 YDTKEDGTMDLKIQPYIDEFAFDYYLVVRNIEELPQLLSSALRQWFQQM 4714


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 106 LKRSLGSALTQWMNPM 121
           L + LG +L +W+NPM
Sbjct: 125 LAKELGYSLIEWLNPM 140


>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 65  IDGFAIMAFRTYEDLEVRFDVDYFFINISFTKTLARKRI 103
           +DG  +  FR+   LE++F  +Y  +++SF  T    RI
Sbjct: 25  LDGRQLSDFRS---LEIQFGKEYGQVDVSFGHTRVMARI 60


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.139    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 360,589
Number of Sequences: 5004
Number of extensions: 9775
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 4
length of query: 126
length of database: 2,362,478
effective HSP length: 65
effective length of query: 61
effective length of database: 2,037,218
effective search space: 124270298
effective search space used: 124270298
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)