GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005366-TA|BGIBMGA005366-PA|undefined
         (126 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81137-9|CAB03466.1|  182|Caenorhabditis elegans Hypothetical pr...    29   1.00 

>Z81137-9|CAB03466.1|  182|Caenorhabditis elegans Hypothetical
           protein W02D9.10 protein.
          Length = 182

 Score = 29.1 bits (62), Expect = 1.00
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 65  IDGFAIMAFRTYEDLEVRFDVDYFFINISFTKT 97
           +DG  I+ F  YEDLE+R      F++IS   T
Sbjct: 148 LDGVGILFFNVYEDLEIRL-AQQEFLHISHCHT 179


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.139    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,919,872
Number of Sequences: 27539
Number of extensions: 51540
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 1
length of query: 126
length of database: 12,573,161
effective HSP length: 73
effective length of query: 53
effective length of database: 10,562,814
effective search space: 559829142
effective search space used: 559829142
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)