GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005365-TA|BGIBMGA005365-PA|IPR000859|CUB, IPR002172|Low
density lipoprotein-receptor, class A
         (1008 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              27   0.76 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    26   1.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   3.1  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              25   4.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   9.4  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 27.1 bits (57), Expect = 0.76
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 533 FLNTFFGNKHCGTHKDSRTSRWKCDRPPRRTIGGEGFAQIIITEFPWVGVPIQRD 587
           F  +F G + CG H+ +  S  KCD   R+ +          T +P +   +Q++
Sbjct: 37  FQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKE 91


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 336 PNTSCVYYFQGRSNEIVW-VSFVKYHSAGTE 365
           P T C+YYF    N I++ V   KY +A  E
Sbjct: 299 PLTGCLYYFSTTINPILYNVMSAKYRNAFKE 329


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 620 EDYDDFAFEGEYKFIPTGPGDDTVC-STGWGERRVRGSSGEIRLYDKRQMTIVPEIVGDR 678
           ED+D   FE   KF+P+ P ++ +   + + + RV      + L    +M +  + +   
Sbjct: 303 EDFDGRLFEFPIKFVPSYPFEEDINEGSNYMQTRVPAWCDRVLLNPTDKMLV--QDISSP 360

Query: 679 NVISESVRAEVACV--HRPWLIE 699
           + +   +     C+  H+P  +E
Sbjct: 361 DAVEYGIIGPTTCMGDHKPVFLE 383


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 739 EARDTTRSKEICPDINN-NLELFSPDWKSSETPLET 773
           E R   R  E CPD++N  +   +P  K ++ PL T
Sbjct: 3   EFRHNGRDFEYCPDLDNVTMPETTPRRKKNKKPLPT 38


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 211 IVKYDRSQRVLKIWDQCNVVQDYLTVWDGS 240
           +  YD  Q  ++IW QC    DYL    G+
Sbjct: 189 LAHYD--QTAIEIWKQCEGKIDYLVAGAGT 216


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 316,175
Number of Sequences: 429
Number of extensions: 14384
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 5
length of query: 1008
length of database: 140,377
effective HSP length: 65
effective length of query: 943
effective length of database: 112,492
effective search space: 106079956
effective search space used: 106079956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)