GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005359-TA|BGIBMGA005359-PA|IPR011009|Protein
kinase-like, IPR004119|Protein of unknown function DUF227
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    30   0.60 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   1.4  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    28   1.8  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    28   2.4  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   4.3  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   4.3  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   5.6  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    27   5.6  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   7.4  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    26   9.8  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   9.8  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    26   9.8  

>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 29.9 bits (64), Expect = 0.60
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 305 LIVSACIIPQIWLDDEFTTKTFSDPNQFKKILTIDKG---KFIKKNMEHNLNYRKTVMEI 361
           + VS+CI+  + + D+   ++  D   F  + T  +    K I KN E +LN    V EI
Sbjct: 433 VFVSSCIVSYMQIRDKRIKRSIQDAKDFDDVFTEHESLELKKIGKNDEESLNTTNAVKEI 492


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 70  RLIATLDDAMVFED---LNALGYKVKNKFDKFDLDHTLQSLNTLARFHASSIIFEERRSI 126
           RL+  ++D MV  D    NA+G  ++  + +  LD TL           S+  FE++  I
Sbjct: 846 RLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEKKYRI 905

Query: 127 ELQRNYSMN 135
           +L  + S++
Sbjct: 906 DLMEDRSLS 914


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 274 QLCLEISNLNIINSFTKEELFLSAQEQRKFGLIVSACIIPQIW 316
           QLCL   ++N ++SF      L   EQ+     +S C+ P +W
Sbjct: 47  QLCLSHPSINSLSSFQTYHQLLCVLEQKH----LSECVAPFVW 85


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 9/63 (14%)

Query: 233 FQAIRYQPPASDVMLLLCCNLDKKYR-----EANLSTFLNYYYTELQLCLEISNLNIINS 287
           +Q  +Y+PPA     L   +L+++++     EAN S  +N +  E++  + I+  +  NS
Sbjct: 328 YQLRKYEPPAG----LKIVDLERQWKDFLSEEANQSKLINTHMREIKESMRIAFADRANS 383

Query: 288 FTK 290
           F+K
Sbjct: 384 FSK 386


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 15/113 (13%)

Query: 110 LARFHASSIIFEERRSIELQRNYSMNED--FNQFFDEAGYRESNVWFQQCMNG--ALETV 165
           L++F + S +F E+  +     Y+++E   +N  F+        ++   C      LET+
Sbjct: 476 LSQFASQSPLFREQFLLNFDFTYNLSESEVYNTVFNLC----DELYTTPCKKNMSVLETL 531

Query: 166 HSYSKYNKE-------ELELIDARWSQVWLSALNLSSCSSVYRNVLCHRDLWN 211
           HS  +   E        L L  +   Q+WL     S+ + +Y  ++C+  + N
Sbjct: 532 HSQQRDLMEIVLVAFKYLHLSPSNRLQLWLKVAYCSALADLYELLMCNEKMSN 584


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)

Query: 119 IFEERRSI-ELQRNYSMNED 137
           IFE+RR+I EL+R  S NED
Sbjct: 526 IFEQRRNINELEREQSQNED 545


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 26  KAISRCNPAKANMIKEMKLFDKELSFYSLIRKNMMVAGLKPFSSRLIATLDDAMVFEDLN 85
           K     +P    +I+++  F ++    S   K+ +++ L    S L+ T +DA      N
Sbjct: 600 KTAPEVSPISVTLIEQIPFFLQKRDI-SDDSKDAVLSWLSDLFSNLVCTGEDA------N 652

Query: 86  ALGYKVKN-KFDKFDLDHTLQSLNTLARF 113
            L + ++N     FD D+TL+  N L  F
Sbjct: 653 CLFHLLENVNVTAFDSDYTLKPFNQLMSF 681


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 320 EFTTKTFSDPNQFKKILTIDKGKFIKKNMEHNLNYRKTVMEIFEEI 365
           + +TK F + ++   +  +D    IK NME+N    +T   IFEE+
Sbjct: 195 KISTKRFFEDHEMTILRKLDHPNIIKVNMEYN---SETQFFIFEEM 237


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 2/88 (2%)

Query: 64  LKPFSSRLIATLDDAMVFEDLNALGYKVKNKFDKFDLDHTLQSLNTLARFHASSIIFEER 123
           L P    ++  L  +    +L+ L  +   +F  F  +H    L  + + +   I+FE+ 
Sbjct: 244 LVPLKDCILKALSTSSTKRNLHLLWIEASARF--FPEEHESALLGYIKKLYMKPIVFEDL 301

Query: 124 RSIELQRNYSMNEDFNQFFDEAGYRESN 151
           R   L+ N          F  A   ESN
Sbjct: 302 RPYLLKLNVDAQHRLLDAFKLADLGESN 329


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 94  KFDKFDLDHTLQSLNTLARFHASSIIFEER 123
           +F+ FD+D     L   A+  +S ++ +ER
Sbjct: 513 RFESFDIDDLCSKLKNKAKCSSSGVLLDER 542


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 208 DLWNNNIMFLYEDRTGNPTDCLFV 231
           DLWNN ++F       + T CL+V
Sbjct: 91  DLWNNKLIFFGGMGFNDDTKCLYV 114


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 252 NLDKKYREANLSTFLNYYYTE--LQLCLEISNLNIINSFTKEELFL 295
           N+D K  E      ++Y+     L LC   + L   ++ TKEEL L
Sbjct: 246 NIDNKVDEILKDNIVSYHQPSGTLSLCFSKNELKKHSNLTKEELLL 291


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,842,486
Number of Sequences: 5004
Number of extensions: 82231
Number of successful extensions: 284
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 15
length of query: 371
length of database: 2,362,478
effective HSP length: 74
effective length of query: 297
effective length of database: 1,992,182
effective search space: 591678054
effective search space used: 591678054
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)