GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005359-TA|BGIBMGA005359-PA|IPR011009|Protein
kinase-like, IPR004119|Protein of unknown function DUF227
         (371 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58087-1|AAC50544.1|  752|Homo sapiens Hs-CUL-1 protein.               31   6.5  
BX537409-1|CAD97651.1|  776|Homo sapiens hypothetical protein pr...    31   6.5  
BC125120-1|AAI25121.1|  776|Homo sapiens cullin 1 protein.             31   6.5  
BC125119-1|AAI25120.1|  776|Homo sapiens cullin 1 protein.             31   6.5  
AF062536-1|AAC36681.1|  776|Homo sapiens cullin 1 protein.             31   6.5  
AC006323-3|AAS02034.1|  513|Homo sapiens unknown protein.              31   6.5  

>U58087-1|AAC50544.1|  752|Homo sapiens Hs-CUL-1 protein.
          Length = 752

 Score = 31.1 bits (67), Expect = 6.5
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 53  SLIRKNMMVAGLKPFSSRLIATLDDAMVFEDLNALGYKVKNKFDKFDLDHTLQSLNTLAR 112
           S+I K     G + ++S+L     D  V +DLN    K     +  DLD ++Q L++ + 
Sbjct: 463 SMISKLKQACGFE-YTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQVLSSGSW 521

Query: 113 FHASSIIFEERRSIELQRNYSMNEDFNQFFDEAGYRESNVWFQQCMNGALET 164
               S  F      EL+R+Y   + F  F+          W  Q   G L T
Sbjct: 522 PFQQSCTF--ALPSELERSY---QRFTAFYASRHSGRKLTWLYQLSKGELVT 568


>BX537409-1|CAD97651.1|  776|Homo sapiens hypothetical protein
           protein.
          Length = 776

 Score = 31.1 bits (67), Expect = 6.5
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 53  SLIRKNMMVAGLKPFSSRLIATLDDAMVFEDLNALGYKVKNKFDKFDLDHTLQSLNTLAR 112
           S+I K     G + ++S+L     D  V +DLN    K     +  DLD ++Q L++ + 
Sbjct: 487 SMISKLKQACGFE-YTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQVLSSGSW 545

Query: 113 FHASSIIFEERRSIELQRNYSMNEDFNQFFDEAGYRESNVWFQQCMNGALET 164
               S  F      EL+R+Y   + F  F+          W  Q   G L T
Sbjct: 546 PFQQSCTF--ALPSELERSY---QRFTAFYASRHSGRKLTWLYQLSKGELVT 592


>BC125120-1|AAI25121.1|  776|Homo sapiens cullin 1 protein.
          Length = 776

 Score = 31.1 bits (67), Expect = 6.5
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 53  SLIRKNMMVAGLKPFSSRLIATLDDAMVFEDLNALGYKVKNKFDKFDLDHTLQSLNTLAR 112
           S+I K     G + ++S+L     D  V +DLN    K     +  DLD ++Q L++ + 
Sbjct: 487 SMISKLKQACGFE-YTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQVLSSGSW 545

Query: 113 FHASSIIFEERRSIELQRNYSMNEDFNQFFDEAGYRESNVWFQQCMNGALET 164
               S  F      EL+R+Y   + F  F+          W  Q   G L T
Sbjct: 546 PFQQSCTF--ALPSELERSY---QRFTAFYASRHSGRKLTWLYQLSKGELVT 592


>BC125119-1|AAI25120.1|  776|Homo sapiens cullin 1 protein.
          Length = 776

 Score = 31.1 bits (67), Expect = 6.5
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 53  SLIRKNMMVAGLKPFSSRLIATLDDAMVFEDLNALGYKVKNKFDKFDLDHTLQSLNTLAR 112
           S+I K     G + ++S+L     D  V +DLN    K     +  DLD ++Q L++ + 
Sbjct: 487 SMISKLKQACGFE-YTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQVLSSGSW 545

Query: 113 FHASSIIFEERRSIELQRNYSMNEDFNQFFDEAGYRESNVWFQQCMNGALET 164
               S  F      EL+R+Y   + F  F+          W  Q   G L T
Sbjct: 546 PFQQSCTF--ALPSELERSY---QRFTAFYASRHSGRKLTWLYQLSKGELVT 592


>AF062536-1|AAC36681.1|  776|Homo sapiens cullin 1 protein.
          Length = 776

 Score = 31.1 bits (67), Expect = 6.5
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 53  SLIRKNMMVAGLKPFSSRLIATLDDAMVFEDLNALGYKVKNKFDKFDLDHTLQSLNTLAR 112
           S+I K     G + ++S+L     D  V +DLN    K     +  DLD ++Q L++ + 
Sbjct: 487 SMISKLKQACGFE-YTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQVLSSGSW 545

Query: 113 FHASSIIFEERRSIELQRNYSMNEDFNQFFDEAGYRESNVWFQQCMNGALET 164
               S  F      EL+R+Y   + F  F+          W  Q   G L T
Sbjct: 546 PFQQSCTF--ALPSELERSY---QRFTAFYASRHSGRKLTWLYQLSKGELVT 592


>AC006323-3|AAS02034.1|  513|Homo sapiens unknown protein.
          Length = 513

 Score = 31.1 bits (67), Expect = 6.5
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 53  SLIRKNMMVAGLKPFSSRLIATLDDAMVFEDLNALGYKVKNKFDKFDLDHTLQSLNTLAR 112
           S+I K     G + ++S+L     D  V +DLN    K     +  DLD ++Q L++ + 
Sbjct: 224 SMISKLKQACGFE-YTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQVLSSGSW 282

Query: 113 FHASSIIFEERRSIELQRNYSMNEDFNQFFDEAGYRESNVWFQQCMNGALET 164
               S  F      EL+R+Y   + F  F+          W  Q   G L T
Sbjct: 283 PFQQSCTF--ALPSELERSY---QRFTAFYASRHSGRKLTWLYQLSKGELVT 329


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.324    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,505,097
Number of Sequences: 224733
Number of extensions: 2169692
Number of successful extensions: 4982
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4982
Number of HSP's gapped (non-prelim): 6
length of query: 371
length of database: 73,234,838
effective HSP length: 91
effective length of query: 280
effective length of database: 52,784,135
effective search space: 14779557800
effective search space used: 14779557800
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 66 (30.7 bits)