GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005359-TA|BGIBMGA005359-PA|IPR011009|Protein
kinase-like, IPR004119|Protein of unknown function DUF227
         (371 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    29   0.085
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    28   0.11 

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 28.7 bits (61), Expect = 0.085
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 345 KKNMEHNLNYRKTVMEIFEEIC 366
           K  ++H +N +KT+M I +E+C
Sbjct: 16  KVMLDHTINSKKTIMRILKEVC 37


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 28.3 bits (60), Expect = 0.11
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 348 MEHNLNYRKTVMEIFEEIC 366
           ++H +N +KT+M I +E+C
Sbjct: 2   LDHTINSKKTIMRILKEVC 20


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,038
Number of Sequences: 429
Number of extensions: 5075
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 371
length of database: 140,377
effective HSP length: 59
effective length of query: 312
effective length of database: 115,066
effective search space: 35900592
effective search space used: 35900592
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)