GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005358-TA|BGIBMGA005358-PA|IPR011047|Quinonprotein
alcohol dehydrogenase-like, IPR011046|WD40-like, IPR011009|Protein
kinase-like, IPR001680|WD-40 repeat, IPR004119|Protein of unknown
function DUF227
         (1290 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    31   0.080
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    30   0.11 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    27   0.75 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.99 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   1.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   3.0  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 30.7 bits (66), Expect = 0.080
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 8/72 (11%)

Query: 930 LNLFIKCMPRLDKWKAQYLKELNFFKKEYVMLSKLFKDFRS-------IEASRKWRPKLL 982
           +N+F++ + ++D    +Y  +L F +++++     F DF          +ASR W P L 
Sbjct: 63  VNIFVRSISKIDDVTMEYSVQLTF-REQWLDERLRFNDFGGRLKYLTLTDASRVWMPDLF 121

Query: 983 FIKEDIFVFENI 994
           F  E    F NI
Sbjct: 122 FSNEKEGHFHNI 133


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 30.3 bits (65), Expect = 0.11
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 930 LNLFIKCMPRLDKWKAQYLKELNFFKKEYVMLSKLFKDFRS-------IEASRKWRPKLL 982
           +NLF++ +  +   K +Y  +L F +++++     F DF          +ASR W P L 
Sbjct: 63  VNLFVRSIATISDIKMEYSVQLTF-REQWLDERLRFNDFGGRLKYLTLTDASRVWMPDLF 121

Query: 983 FIKEDIFVFENI 994
           F  E    F NI
Sbjct: 122 FSNEKEGHFHNI 133


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 0.75
 Identities = 16/46 (34%), Positives = 19/46 (41%)

Query: 365 TGHLQLYSTTSNKVLYNIDITGQNRIQPERWNLMPLQTEITCASLS 410
           TG L  +STT N +LYN+          E     P    IT   LS
Sbjct: 301 TGCLYYFSTTINPILYNVMSAKYRNAFKETCRCSPSNPSITRTGLS 346


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 364 PTGHLQLYSTTSNKVLYNIDITGQNRIQPERWNLMPLQTEITCASLSPNGQWLVTSEYRN 423
           PTG L L   T   + Y   I G+  I P+  +L+ L  + T       G  LV  E  +
Sbjct: 722 PTGQLLLDYLTDTVLAYKPKILGKPTISPDSRHLVTLDKQET-------GVTLVVQEISS 774

Query: 424 DGFMY 428
           DG  +
Sbjct: 775 DGLKF 779


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 736 PEKTKEGRLESIPHSNAPVSKFSTL--LAEQQLSAVRRGAPVDTLASD--VDATSSAAIS 791
           PEK KE  ++    S   +S++       +++++ V R   VD +  D  +       IS
Sbjct: 211 PEKKKEDEIDEGKESKTKLSQWRKDGGTVKKKVNYVYRS--VDQVLEDGKLKPNKKVRIS 268

Query: 792 N-ISMAPPY-MTPPVSLLCTTFLQELAGQEEPKDDEVTDLEEKMN 834
           N +S      MT P   + + +     GQ+ P ++ VTD + K+N
Sbjct: 269 NEMSKVKVIDMTGPEQRILSGYHAIAGGQQRPDENVVTDKKSKVN 313


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 33/174 (18%), Positives = 72/174 (41%), Gaps = 13/174 (7%)

Query: 430 EERLKFWTINQNNKQKSPFLMNTCINLSHGGCRVVALAFSYD----GKLCVSSGLDQKFR 485
           ++ L+ + +   +   + F+ N  ++L  GGC   A A+  D    G +  S   ++ +R
Sbjct: 171 DKLLRQYRLRAEDINMNTFIANIAVDLGKGGCND-AFAYMSDELGYGLIVYSWEQNRSWR 229

Query: 486 VWE-FDCSNNKRGIWVC--LTACYYSSGV-AQYLSQGILNNFKIGHSEPSDDFTQFPYMK 541
           +   +   +   G +    L   +   G+    LS   +N ++     P     +F    
Sbjct: 230 ITHSYFMPDPLAGDYNIGGLNFQWGEEGIFGMSLSPIAVNGYRTLFFHPLSSRREFAVST 289

Query: 542 EMRKDDPVKKLANFHNEYTITDDRMSAGSCSNSENEMSGLAMSR--DGSLIAAW 593
            + +D+ + +  N ++E+ I  +R   G C+ S  + +GL      D + +  W
Sbjct: 290 RILRDENLSQ--NSYHEFQILPERGELGHCTASVMDENGLQFFNLIDQNAVGCW 341


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 395,723
Number of Sequences: 429
Number of extensions: 17452
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 6
length of query: 1290
length of database: 140,377
effective HSP length: 66
effective length of query: 1224
effective length of database: 112,063
effective search space: 137165112
effective search space used: 137165112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)