Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005357-TA|BGIBMGA005357-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR002343|Paraneoplastic
encephalomyelitis antigen
         (356 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   0.76 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   9.3  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 22/109 (20%), Positives = 51/109 (46%), Gaps = 11/109 (10%)

Query: 109 FVDFETIASAEAAVKGLQAKGVQA-QMAKVGIWFLRR----LNRQQEQDPTNLYMANLPP 163
           F  ++ I   +  +  L A   QA +M+ + +    +    LN +   DP  ++  +L  
Sbjct: 423 FAGYQAICKPKLKIADLSAHDKQAVRMSALNVQPTSKGRITLNSKDPLDPPVIWSNDLAT 482

Query: 164 HFKENDVDQLLAKFGQVVSTRILRDTHGQSKGVGFARMESREKCEQIIQ 212
               + + Q +    ++V+T ++RD      GV F ++E ++ C++ ++
Sbjct: 483 EHDRSVMIQAIRVVQKLVNTTVMRDL-----GVEFQKIELKQ-CDEFVE 525


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 202 ESREKCEQIIQMFNGNPIPGAKEPLLVKFADGGNKKKSSYKQNESNGRTWRDNSET 257
           E R K  +I QM    P    K  +L    +G  K+KSS  +NES   +   +++T
Sbjct: 185 EQRYKQVEISQMTE--PSSSTKSYVLEGPRNGKRKRKSSTIENESETESNASSTKT 238


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 11/46 (23%), Positives = 24/46 (52%)

Query: 58  VEQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNK 103
           ++ L+R +LY+  +  +   +DLV M + + +       L+  T+K
Sbjct: 320 LDDLTRRSLYLSDIPLHDATRDLVLMSEQFEADYKLTRNLELLTDK 365


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 11/46 (23%), Positives = 24/46 (52%)

Query: 58  VEQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNK 103
           ++ L+R +LY+  +  +   +DLV M + + +       L+  T+K
Sbjct: 320 LDDLTRRSLYLSDIPLHDATRDLVLMSEQFEADYKLTRNLELLTDK 365


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 239 SSYKQNESNGRTWRDNSETITQAAMAVSGVYAGTMSAGGAGG-ECAGVYRS 288
           +S   N   G+T   N   +   +++V      T+S GG GG +  GV +S
Sbjct: 931 TSSPTNSLVGKTVAVNFRDVIAKSISVKFQEGQTVSGGGMGGCQPGGVVQS 981


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,947
Number of Sequences: 429
Number of extensions: 2665
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 356
length of database: 140,377
effective HSP length: 58
effective length of query: 298
effective length of database: 115,495
effective search space: 34417510
effective search space used: 34417510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)