Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005357-TA|BGIBMGA005357-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR002343|Paraneoplastic
encephalomyelitis antigen
(356 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 162 6e-41
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 82 1e-16
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 69 1e-12
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 58 2e-09
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 57 4e-09
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 53 7e-08
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 50 5e-07
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 47 5e-06
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 46 1e-05
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 46 1e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 43 6e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 43 6e-05
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 43 8e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 41 2e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 41 3e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 40 7e-04
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 40 7e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 38 0.003
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 38 0.003
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 38 0.003
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 37 0.005
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 37 0.005
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.007
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.007
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 35 0.015
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 35 0.020
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 34 0.027
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 33 0.047
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 33 0.081
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 32 0.11
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 32 0.14
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 31 0.25
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.25
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 30 0.57
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 29 1.3
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 28 1.7
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 27 3.1
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 3.1
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 27 4.0
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 27 5.3
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 27 5.3
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 27 5.3
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 27 5.3
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 7.1
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 7.1
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 26 9.3
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 9.3
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 26 9.3
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 26 9.3
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 26 9.3
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 162 bits (394), Expect = 6e-41
Identities = 86/214 (40%), Positives = 124/214 (57%), Gaps = 6/214 (2%)
Query: 58 VEQLSRT-NLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIA 116
+E SRT N+YIRGL PNT+D++L+ +G + S+KAI+D TN CKGYGF FE
Sbjct: 289 MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEK 348
Query: 117 SAEAAVKGLQAKGVQAQMAKVGIWFLRRLNRQQEQDPTNLYMANLPPHFKENDVDQLLAK 176
SA + + G Q AK F RL Q+ + TNLY++NLP H+ E+D+ L K
Sbjct: 349 SALICISAMTLCGYQCSFAKES--FSARLQSLQDTESTNLYISNLPLHWNESDISTLF-K 405
Query: 177 FGQVVSTRILRDTHGQSKGVGFARMESREKCEQIIQMFNGNPIPGAKEPLLVKFADGGNK 236
+++S R+LRD+ QS+GVGFARM+ R+ E II FN + A PL ++FAD ++
Sbjct: 406 PSKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIINKFNNFVLDPALPPLQIRFADSTDQ 465
Query: 237 KKSSYKQNESNGRTWRDNSETITQAAMAVSGVYA 270
KK +K R WR ++ M + ++
Sbjct: 466 KK--FKGQTQKRRLWRAREYSVLTKGMTANNAFS 497
Score = 32.7 bits (71), Expect = 0.081
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 143 RRLNRQQEQDPTNLYMANLPPHFKENDVDQLLAKFGQVVSTRILRDTH-GQSKGVGFARM 201
++ N + N+Y+ LPP+ + ++ +FG+V S++ + D KG GFA
Sbjct: 285 KKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACF 344
Query: 202 ESRE 205
E +
Sbjct: 345 EEEK 348
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 81.8 bits (193), Expect = 1e-16
Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 7/171 (4%)
Query: 58 VEQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIAS 117
+ ++ N++I+ L P +K L +G I+S K +D+ N KGYGFV F+++ S
Sbjct: 162 LRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSVES 220
Query: 118 AEAAVKGLQAKGVQAQMAKVGIWFLRRLNRQQEQDP-----TNLYMANLPPHFKENDVDQ 172
A AA++ + + + VG RR RQ + + TN+Y+ NL E +
Sbjct: 221 ANAAIEHVNGMLLNDKKVYVGHHVSRR-ERQSKVEALKANFTNVYIKNLDTEITEQEFSD 279
Query: 173 LLAKFGQVVSTRILRDTHGQSKGVGFARMESREKCEQIIQMFNGNPIPGAK 223
L +FG++ S +++D + + +G GF + E ++ + N G K
Sbjct: 280 LFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKK 330
Score = 68.5 bits (160), Expect = 1e-12
Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 22/228 (9%)
Query: 64 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVK 123
TN+YI+ L T+++ + +G I S + D+N +K +G+GFV++ A+ AV
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQN-DKPRGFGFVNYANHECAQKAVD 319
Query: 124 GLQAKGVQAQMAKVG--------------IWFLRRLNRQQEQDPTNLYMANLPPHFKEND 169
L K + + VG + +L + + NL++ NL +
Sbjct: 320 ELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDER 379
Query: 170 VDQLLAKFGQVVSTRILRDTHGQSKGVGFARMESREKCEQIIQMFNGNPIPGAKEPLLVK 229
+ + FG + S +I+ D G+SKG GF + E+ + + N + G +PL V
Sbjct: 380 LKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAG--KPLYVA 437
Query: 230 FADGGNKKKSSYKQNESNGRTWRDNSETITQAAMAVSGVYAGTMSAGG 277
A ++ ++++ + N + Q A +G+ A A G
Sbjct: 438 LA-----QRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATG 480
Score = 67.7 bits (158), Expect = 2e-12
Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 2/152 (1%)
Query: 65 NLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVKG 124
+LY+ L P+ T+ L ++ G + S + D T + GY +V+F + E A+
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 125 LQAKGVQAQMAKVGIWFLRRLNRQQEQDPTNLYMANLPPHFKENDVDQLLAKFGQVVSTR 184
L ++ + ++ +W +R ++ N+++ NL P + + FG+++S +
Sbjct: 141 LNYTLIKGRPCRI-MW-SQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCK 198
Query: 185 ILRDTHGQSKGVGFARMESREKCEQIIQMFNG 216
+ D G +KG GF +S E I+ NG
Sbjct: 199 VAVDELGNAKGYGFVHFDSVESANAAIEHVNG 230
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 68.5 bits (160), Expect = 1e-12
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 15/170 (8%)
Query: 66 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVKGL 125
+++ LS N D+ L Q + YG+I+ + I+D + + KGYG+VDFET +A+AAV
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 126 QAKGVQAQMAKVGIWFLRRLNRQ------------QEQDPTN-LYMANLPPHFKENDVDQ 172
K + +M + + R N Q Q +P++ +++ NL + E+D+
Sbjct: 325 GTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLST 384
Query: 173 LLAKFGQVVSTRILRDTH-GQSKGVGFARMESREKCEQIIQMFNGNPIPG 221
G + S R+ D G+ KG G+ + ++ ++M NG+ I G
Sbjct: 385 AFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM-NGHFIAG 433
Score = 31.5 bits (68), Expect = 0.19
Identities = 24/139 (17%), Positives = 56/139 (40%), Gaps = 1/139 (0%)
Query: 148 QQEQDPTNLYMANLPPHFKENDVDQLLAKFGQVVSTRILRDTH-GQSKGVGFARMESREK 206
Q + +++ L + + + Q ++G +V R++ D G+SKG G+ E+ E
Sbjct: 257 QDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEA 316
Query: 207 CEQIIQMFNGNPIPGAKEPLLVKFADGGNKKKSSYKQNESNGRTWRDNSETITQAAMAVS 266
+ + I G L + N + + ++ + G + S+T+ ++ +
Sbjct: 317 AKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFN 376
Query: 267 GVYAGTMSAGGAGGECAGV 285
+A G G+ +
Sbjct: 377 ATEDDLSTAFGGCGDIQSI 395
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 58.0 bits (134), Expect = 2e-09
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 17/184 (9%)
Query: 62 SRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAA 121
S + L++R L+ T DL G I + + T + +GYGFV F + A+ A
Sbjct: 3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
Query: 122 VKGLQAKGVQAQMAKVGIWFLRRLNR-------------QQEQDPTNLYMANLPPHFKE- 167
K L+ K + ++ ++ R+ + +Q+ P L + NLP K+
Sbjct: 63 AKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRP-RLIIRNLPWSIKKP 121
Query: 168 NDVDQLLAKFGQVVSTRILRDTHGQSKGVGFARMESREKCEQIIQMFNGNPIPGAKEPLL 227
++ +KFG+V +I G+ G F M+ R+ E+ + NG I G P+
Sbjct: 122 QHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDG--RPIA 179
Query: 228 VKFA 231
V +A
Sbjct: 180 VDWA 183
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 56.8 bits (131), Expect = 4e-09
Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 11/170 (6%)
Query: 66 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVKGL 125
+Y+ L TD L ++C G +++ D+ N G+GF +F E A + L
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 126 QAKGVQAQMAKVGIWFLRRLNRQQEQDP---TNLYMANLPPHFKENDVDQLLAKFGQVV- 181
+ + +V R ++ + + NL++ NL P E + + GQ+V
Sbjct: 73 NQVKLFGKPIRV-----NRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVK 127
Query: 182 STRILRDTHGQSKGVGFARMESREKCEQIIQMFNGNPIPGAKEPLLVKFA 231
+ ++ RD +G+SKG GF +S E + I+ N + +P+ V +A
Sbjct: 128 APQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFL--MNKPITVSYA 175
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/96 (22%), Positives = 43/96 (44%)
Query: 57 GVEQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIA 116
GV L NL++ L P ++ L G ++ + + KGYGFV +++
Sbjct: 92 GVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFE 151
Query: 117 SAEAAVKGLQAKGVQAQMAKVGIWFLRRLNRQQEQD 152
+A+AA++ + + + + V F R ++ D
Sbjct: 152 TADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGD 187
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 52.8 bits (121), Expect = 7e-08
Identities = 37/184 (20%), Positives = 78/184 (42%), Gaps = 11/184 (5%)
Query: 66 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVKGL 125
++I GL+ TTD L + +G ++ + D T + +G+GF+ F+ V +
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKN----PKCVNEV 220
Query: 126 QAKGVQAQMAKVGIWFLRRLNRQQEQDPTNLYMANLPPHFKENDVDQLLAKFGQVVSTRI 185
+K K+ I R + R++++ +++ +P E + +FG+V+ +
Sbjct: 221 MSKEHHLD-GKI-IDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATL 278
Query: 186 LRDTH-GQSKGVGFARMESREKCEQIIQM----FNGNPIPGAKEPLLVKFADGGNKKKSS 240
+ D G+ +G GF E+ E + +G P+ + D ++ +
Sbjct: 279 MMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRHQHG 338
Query: 241 YKQN 244
Y N
Sbjct: 339 YHGN 342
Score = 41.9 bits (94), Expect = 1e-04
Identities = 15/64 (23%), Positives = 36/64 (56%)
Query: 59 EQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASA 118
EQ +++ G+ + T+++ +G ++ ++DK+T + +G+GFV +E ++
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAV 301
Query: 119 EAAV 122
EA +
Sbjct: 302 EATM 305
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 50.0 bits (114), Expect = 5e-07
Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 12/176 (6%)
Query: 58 VEQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIIST--KAILD-KNTNK--CKGYGFVDF 112
+E L +Y++ L+ +T ++ ++ + +S +A D K K G+GFV+F
Sbjct: 613 IESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEF 672
Query: 113 ETIASAEAAVKG-----LQAKGVQAQMAKVGIWFLRRLNRQQEQDP--TNLYMANLPPHF 165
+ ASA AA+ L ++ +++ G+ + +Q P T + + NLP
Sbjct: 673 KDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKILIKNLPFEA 732
Query: 166 KENDVDQLLAKFGQVVSTRILRDTHGQSKGVGFARMESREKCEQIIQMFNGNPIPG 221
+ DV LL +GQ+ S R+ + ++G FA + + ++ + G
Sbjct: 733 TKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNTHLLG 788
Score = 42.7 bits (96), Expect = 8e-05
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 58 VEQLSRTN-LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIA 116
++ +S T L++R L+ + + DL + +G + +DK TN KG+ ++DF
Sbjct: 316 IQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDAD 375
Query: 117 SAEAAVKGLQAKGVQAQMAKV 137
A A L AK Q ++ V
Sbjct: 376 DAVRAYLELDAKPFQGRLLHV 396
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 46.8 bits (106), Expect = 5e-06
Identities = 35/173 (20%), Positives = 72/173 (41%), Gaps = 10/173 (5%)
Query: 59 EQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDF--ETIA 116
E+ R +++ L+ T ++L + G + + + DK + + KG +V+F E
Sbjct: 235 EERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSV 294
Query: 117 SAEAAVKGLQAKGVQAQMAKVGIWFLRRLNRQQE-------QDPTN-LYMANLPPHFKEN 168
A A+ G + G+ + R+ E + P + L ++N+ + +
Sbjct: 295 QAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDE 354
Query: 169 DVDQLLAKFGQVVSTRILRDTHGQSKGVGFARMESREKCEQIIQMFNGNPIPG 221
DV + FG + + RD +SKG G+ + + ++ NG + G
Sbjct: 355 DVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAG 407
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 45.6 bits (103), Expect = 1e-05
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 64 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTK-AILDKNTNKCKGYGFVDFETIASAEAAV 122
TNLY+ P + D+ ++ YG+++ + L NTN + + +V A A+
Sbjct: 666 TNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTN--RRFCYVQMRKPDEAHNAL 723
Query: 123 KGLQAKGVQAQMAKVGIWF---LRRLNRQ-QEQDPTNLYMANLPPHFKENDVDQLLAKFG 178
+ L K ++ + + ++ LRR R + LY+ N+ E DV+ +G
Sbjct: 724 Q-LHKKLLE-EKYPIQVFISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYG 781
Query: 179 QVVSTRILRDTHGQSKGVGFARMESREKCEQII 211
QV S RI + Q KG G+ M + + E +
Sbjct: 782 QVESVRIPK-RFNQHKGFGYVVMTTNQDAENAL 813
Score = 39.1 bits (87), Expect = 0.001
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 154 TNLYMANLPPHFKENDVDQLLAKFGQVVSTRILRDTHGQSKGVGFARMESREKCEQIIQM 213
TNLY+ N PP + E D+ +L + +G VV R + ++ + +M ++ +Q+
Sbjct: 666 TNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQL 725
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 145 LNRQQEQDPTNLYMANLPPHFKENDVDQLLAKFGQVVSTRILRDTHGQSKGVGFARMESR 204
+ + + ++ + + NLP EN++ G ++ IL D K V A++E
Sbjct: 581 IEQHRNREELTVLVTNLPSDISENELKIFFKDCGNIIRIFILED---NQKDVKVAQIEFS 637
Query: 205 EKCE 208
E E
Sbjct: 638 ETSE 641
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 45.6 bits (103), Expect = 1e-05
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 58 VEQLSRTNLYIRGLSPNTTDKDLVQM-CQMYGSIISTKAILDKNTNKCKGYGFVDFETIA 116
+ + S ++++ LSPN + D+ + Y S S K + D TN +GYGFV F
Sbjct: 180 ISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDEN 239
Query: 117 SAEAAVKGLQAKGVQAQMAKVGIWFLRRLNRQQEQDPTNLYMANLPP 163
++A+ +Q + + +VG+ ++ P N+ ++PP
Sbjct: 240 DQKSALAEMQGQICGDRPIRVGL--ATPKSKAHVFSPVNVVPVSMPP 284
Score = 44.0 bits (99), Expect = 3e-05
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 154 TNLYMANLPPHFKENDVDQLLAKFGQVVSTRILRDTH-GQSKGVGFARMESREKCEQIIQ 212
T L+M L P E + Q+ G+ V +++R+ + G + G F S + +
Sbjct: 93 TTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMS 152
Query: 213 MFNGNPIPGAKEPLLVKFADGGN-KKKSSYKQNE 245
M N PIPG + +A GG ++KS K +E
Sbjct: 153 M-NNKPIPGTNHLFKLNWASGGGLREKSISKASE 185
Score = 39.9 bits (89), Expect = 5e-04
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 9/145 (6%)
Query: 63 RTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAV 122
+T L++ L P T+ + Q+ G + K I ++ T GY FV+F + A +A+
Sbjct: 92 KTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM 151
Query: 123 KGLQAKGVQA--QMAKVGIWFLRRLNRQQ---EQDPTNLYMANLPPHFKENDVDQLLA-K 176
+ K + + K+ W R++ + ++++ +L P+ E DV L A +
Sbjct: 152 -SMNNKPIPGTNHLFKLN-WASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASR 209
Query: 177 FGQVVSTRILRDTH-GQSKGVGFAR 200
+ S +I+ D S+G GF R
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVR 234
Score = 31.9 bits (69), Expect = 0.14
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 62 SRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAA 121
+ + +++ GLS ++++L + Q +G I+ K KG GFV F SAE A
Sbjct: 301 ANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI------PPGKGCGFVQFVNRQSAEIA 354
Query: 122 VKGLQ 126
+ LQ
Sbjct: 355 INQLQ 359
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 43.2 bits (97), Expect = 6e-05
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 66 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVK 123
L++ L TTD DL + G I + + ++T KCKG+GFVDF I + A++
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 43.2 bits (97), Expect = 6e-05
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 66 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVKGL 125
L++ L+P T D+DL + +G IIS + I DK T Y F++F+ S E A +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 126 Q 126
Q
Sbjct: 306 Q 306
Score = 39.5 bits (88), Expect = 7e-04
Identities = 30/140 (21%), Positives = 63/140 (45%), Gaps = 4/140 (2%)
Query: 113 ETIASAEAAVKGLQAKGVQAQMAKVGIWFLRRLNRQQEQDPTN-LYMANLPPHFKENDVD 171
E I S + K + K ++A+ V + + L P N L++ L P ++ D++
Sbjct: 202 EQIESETSEDKLQREKEMEAEAEAVTLEMIGDLPFAHVAPPENVLFVCKLNPVTQDEDLE 261
Query: 172 QLLAKFGQVVSTRILRDTH-GQSKGVGFARMESREKCEQIIQMFNGNPIPGAKEPLLVKF 230
+ ++FG+++S +++RD G S F +++E E+ I ++ + V F
Sbjct: 262 LIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSR--IHVDF 319
Query: 231 ADGGNKKKSSYKQNESNGRT 250
+ + + Y N R+
Sbjct: 320 SQSVARYRQYYNSNRDRKRS 339
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 42.7 bits (96), Expect = 8e-05
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 62 SRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAA 121
S+ +YI L N + +V++ + +G ++S + I + KG+ F +F+ + AE A
Sbjct: 308 SKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVA 367
Query: 122 VKGLQAKG-----VQAQMAKVGI 139
+ GL K + AQ A VG+
Sbjct: 368 ISGLDGKDTYGNKLHAQFACVGL 390
Score = 39.5 bits (88), Expect = 7e-04
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 156 LYMANLPPHFKENDVDQLLAKFGQVVSTRILRD-THGQSKGVGFARMESREKCEQIIQMF 214
+Y++NLP + E+ V +LL FG ++S +++++ G SKG F ++ E I
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 215 NGNPIPGAKEPLLVKFADGGNKKKSSYKQN 244
+G G K L +FA G + K N
Sbjct: 372 DGKDTYGNK--LHAQFACVGLNQAMIDKSN 399
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 57 GVEQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIA 116
G E L +L++ G++ + +L Q+ +G++ + + + T +G+GF+ F T+
Sbjct: 95 GSENLGN-DLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE 153
Query: 117 SAEAAVKGLQAKGVQAQMAKV 137
A +A+ L ++ ++ V
Sbjct: 154 EATSAIDNLNSQEFYGRVLNV 174
Score = 37.1 bits (82), Expect = 0.004
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 155 NLYMANLPPHFKENDVDQLLAKFGQVVSTRILRD-THGQSKGVGFARMESREKCEQIIQM 213
+L+++ + +E+++ Q+ +KFG V RI+R+ S+G GF + E+ I
Sbjct: 102 DLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDN 161
Query: 214 FNGNPIPG 221
N G
Sbjct: 162 LNSQEFYG 169
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 40.7 bits (91), Expect = 3e-04
Identities = 42/177 (23%), Positives = 70/177 (39%), Gaps = 30/177 (16%)
Query: 65 NLYIRGLSPNTTDKDLVQMCQ-MYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVK 123
++++ L P T D DL + +Y S S K I+D T + YGFV F + + A+
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 124 GLQAKGVQAQMAKV-----------------GIWFLRRLNRQQEQD-------PTNLYMA 159
+Q Q + ++ GI NRQ QD T +++
Sbjct: 243 HMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVG 302
Query: 160 NLPPHFKENDVDQLLAKFGQVVSTRILRDTHGQSKGVGFARMESREKCEQIIQMFNG 216
L + E D+ FG++++ +I KG GF + + E+ I G
Sbjct: 303 GLASNLSEKDLQVCFQPFGRILNIKI-----PFGKGCGFVQYSEKSAAEKAINTMQG 354
Score = 37.1 bits (82), Expect = 0.004
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 156 LYMANLPPHFKENDVDQLLAKFGQVVSTRILRDTHGQSKGV---GFARMESREKCEQIIQ 212
L+M +L P + QL A + V+ +++R S+ + F + S E+ +
Sbjct: 87 LWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALM 146
Query: 213 MFNGNPIPGAKEPLLVKFADGGNKKKSSY 241
+N IPGA + +A GG + +++
Sbjct: 147 KYNNTMIPGAHCTFKLNWATGGGIQHNNF 175
Score = 35.5 bits (78), Expect = 0.012
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 64 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVK 123
T +++ GL+ N ++KDL Q +G I++ K KG GFV + ++AE A+
Sbjct: 297 TTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFG------KGCGFVQYSEKSAAEKAIN 350
Query: 124 GLQ 126
+Q
Sbjct: 351 TMQ 353
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.5 bits (88), Expect = 7e-04
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 156 LYMANLPPHFKENDVDQLLAKFGQVVSTRILRDTHGQSKGVGFARMESREKCEQIIQMFN 215
+Y+ NLP + ++ L G V+ RI + G+SKG G + E+ I+ N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 216 GNPIPGAKEPLLVKFA 231
G G PL + +A
Sbjct: 342 GYRYGG--RPLQLSYA 355
Score = 35.1 bits (77), Expect = 0.015
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 161 LPPHFKENDVDQLLAKFGQVVSTRILRDTHGQSKGVGFARMESREKCEQIIQMFNGNPIP 220
LP + + D+ L + G V+ I + G+S+G+G M S ++ IQM +
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFM 249
Query: 221 G-AKEPLLVKFA 231
G E L +FA
Sbjct: 250 GRTLEVRLDRFA 261
Score = 33.9 bits (74), Expect = 0.035
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 66 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVKGL 125
+Y+ L T+D++L+ + GS+I + I + T + KG+G V FE A ++++ L
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRAR-IAYEPTGRSKGFGVVQFENENDAASSIEKL 340
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 39.5 bits (88), Expect = 7e-04
Identities = 38/173 (21%), Positives = 62/173 (35%), Gaps = 24/173 (13%)
Query: 61 LSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEA 120
+S T L++ + P T +D++ + YG I+ K + G+GFV+ E A
Sbjct: 1 MSETRLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARD 52
Query: 121 AVKGLQAKGVQAQMAKVGIWFLRRLNRQQEQDPT------------NLYMANLPPHFKEN 168
V Q K V R R+ ++ L + NL
Sbjct: 53 IVNDFQGKEFMGSRIVVEPARGERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQ 112
Query: 169 DVDQLLAKFGQVVSTRILRDTHGQSKGVGFARMESREKCEQIIQMFNGNPIPG 221
D+ ++ K G+ T D H ++ G G + E + NG I G
Sbjct: 113 DLKDVMRKAGEPTFT----DAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKG 161
Score = 37.5 bits (83), Expect = 0.003
Identities = 18/94 (19%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 154 TNLYMANLPPHFKENDVDQLLAKFGQVVSTRILRDTHGQSKGVGFARMESREKCEQIIQM 213
T L++ +PP D+ +GQ++ +++ G GF +E I+
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLM-------NGFGFVEVEDARDARDIVND 56
Query: 214 FNGNPIPGAKEPLLVKFADGGNKKKSSYKQNESN 247
F G G++ ++V+ A G +++ +++++ ++
Sbjct: 57 FQGKEFMGSR--IVVEPARGERRRRENFRESAAS 88
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 37.5 bits (83), Expect = 0.003
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 64 TNLYIRGLSPN--TTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAA 121
+NLY++ L T L + +GSI+S+ N+ KGYGFV F I +A A
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
Query: 122 VKGLQAKGVQAQMAKVGIWFLRR 144
L G+ ++ + F R
Sbjct: 442 KDTL--NGMMVGKKRIFVCFAER 462
Score = 34.3 bits (75), Expect = 0.027
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 152 DPTNLYMANLPPHF--KENDVDQLLAKFGQVVSTRI-LRDTHGQSKGVGFARMESREKCE 208
DP+NLY+ NL ++ ++ L + FG ++S+ + G SKG GF E
Sbjct: 380 DPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAV 439
Query: 209 QIIQMFNGNPIPGAKEPLLVKFAD 232
+ NG + K+ + V FA+
Sbjct: 440 RAKDTLNGMMV--GKKRIFVCFAE 461
Score = 27.1 bits (57), Expect = 4.0
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 156 LYMANLPPHFKENDVDQLLAKFGQVVSTRILRDTHGQSKGVGFARMESREKCEQIIQMFN 215
L + NLP D+ + G V T + + + G M+S E C+ I+ N
Sbjct: 205 LSILNLPAEVTPIDLYNHFKQAGVVKGTAVSQFLDQRGFRYGEVIMDSVESCQNAIEKLN 264
Query: 216 GNPIPGAKEPLLVKFADGGNKKKSSYK 242
P G+ + +K NK SS K
Sbjct: 265 NVPYKGSILEVSIK-----NKASSSVK 286
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 37.5 bits (83), Expect = 0.003
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 66 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVKGL 125
+YI L + + D++ + +G + + DK T K KG+ F+ +E S AV +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 126 QAKGVQAQMAKVGIWFLRRLNRQQEQDPTNL 156
+ ++ +V ++ Q+E++P NL
Sbjct: 93 TNVKLLDRLVRVDHVASYKV-PQKEKEPANL 122
Score = 36.7 bits (81), Expect = 0.005
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 148 QQEQDPTNLYMANLPPHFKENDVDQLLAKFGQVVSTRILRDTH-GQSKGVGFARMESR 204
Q D +Y+ NL E+D+ + ++FG+ V ++RD G+SKG F + E +
Sbjct: 25 QDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQ 82
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 37.5 bits (83), Expect = 0.003
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 153 PTNLYMANLPPHFKENDVDQLLAKFGQVVSTRILRDTHGQSKGVGFARMESREKCEQIIQ 212
PTN+ + NL P +DV L FG++++ ++ D+ G+ + R + +Q++Q
Sbjct: 99 PTNVVIENLAPGTSSDDVAATLLNFGEILNCQV-NDSQGKVR--ASVRFSTLASAQQVVQ 155
Query: 213 MFNGNPIPGAKEPLLVKFADGGNKKKSSYKQ 243
+G G K +K +KK+ + K+
Sbjct: 156 KLDGVTADGFKLSCYIK---KNSKKRRTQKK 183
Score = 34.7 bits (76), Expect = 0.020
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 64 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVK 123
TN+ I L+P T+ D+ +G I++ + N ++ K V F T+ASA+ V+
Sbjct: 100 TNVVIENLAPGTSSDDVAATLLNFGEILNCQV----NDSQGKVRASVRFSTLASAQQVVQ 155
Query: 124 GLQAKGVQAQMAKVGIWFLRRLNRQQEQ 151
L GV A K+ + + +++ Q
Sbjct: 156 KLD--GVTADGFKLSCYIKKNSKKRRTQ 181
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 36.7 bits (81), Expect = 0.005
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 156 LYMANLPPHFKENDVDQLLAKFGQVVSTRILRDTHGQSKGVGFARMESREKCEQIIQMFN 215
L++ N+P + +D++L G++ S R + D GFA ES E+ + ++ N
Sbjct: 141 LFIGNIPKELDDFWMDKILRLSGKLASWRRVADADNSMTSFGFAEFESNEQFSRALEALN 200
Query: 216 GNPIP 220
+P
Sbjct: 201 DFVVP 205
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 36.7 bits (81), Expect = 0.005
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 150 EQDPTN--LYMANLPPHFKENDVDQLLAKFGQVVSTRILRDTHGQSKGVGFARMESREKC 207
E DP + L++ NL + + Q +++ +V T+++RD G+++G GF + ++
Sbjct: 24 EWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQF 83
Query: 208 EQIIQMFNGNPIPGAKEPLLVKFADGGNKKKSSYKQNESNGRT 250
+ + NG I G++ L ++ S K NE N +T
Sbjct: 84 LKAWREKNGKYI-GSRPVKL-------SRATSDVKPNEVNEKT 118
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 36.3 bits (80), Expect = 0.007
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 66 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAV 122
+ + G+ P T++ + + +G + + LD+ T KGY +++ T+ A+ AV
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAV 68
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 36.3 bits (80), Expect = 0.007
Identities = 14/60 (23%), Positives = 34/60 (56%)
Query: 66 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVKGL 125
+Y+ + ++ ++ + + G + S + ++D + + KGYGF ++ A+A +AV+ L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 35.1 bits (77), Expect = 0.015
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Query: 66 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVD--FETIASAEAAVK 123
+Y+ L PNT +++ C G I S + +KN C F+D T +AA+K
Sbjct: 117 VYVGNLPPNTPIDEILS-CVRTGPIESAWILPEKN---CAFISFLDPSHATAFFQDAALK 172
Query: 124 GLQAKGVQAQMAKVGIWFLRRLNR-------QQEQDPTNLYMANLPPHFKENDVDQLLAK 176
L +G + KVG W + QQ N+++ NLP E+++ + L
Sbjct: 173 RLTIRGTEV---KVG-WGKNSASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEP 228
Query: 177 FGQVVSTRILRD 188
FG + +I+ +
Sbjct: 229 FGPIDQIKIVTE 240
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 34.7 bits (76), Expect = 0.020
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 66 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVK 123
+++ LS +T + D+ + YG I + + +K T K GY FV FE + A K
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYK 159
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 152 DP-TNLYMANLPPHFKENDVDQLLAKFGQVVSTRILRD-THGQSKGVGFARMESREK 206
DP ++++ L KE+D+++ ++G + R++R+ G+S G F E RE+
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE-RER 152
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 34.3 bits (75), Expect = 0.027
Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 67 YIRGLSPNTTDKDLVQMCQMYGS-IISTKAILDKNTNKCKGYGFVDFETIASAEAAVKGL 125
++ LS + T+ DL +G + S + ++D T + +G+G+V+FET + AA+ L
Sbjct: 97 HVGNLSFDLTENDLGDF---FGEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAAL-AL 152
Query: 126 QAKGVQAQMAKVGIWFLRRLNRQQEQDPTN-LYMANLPP 163
+ + + ++ + RR ++E+ + + LPP
Sbjct: 153 SGEDLMGRPVRITVAEPRRSFAREERSTGDWVRRGPLPP 191
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 33.5 bits (73), Expect = 0.047
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 66 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVKGL 125
+++ + + +++ + ++ G + + K +LD T KGYGF +F + AV+ L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 32.7 bits (71), Expect = 0.081
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 59 EQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDF 112
E+ L + LS +T +++L + + +G I DK T + KG+ FV +
Sbjct: 197 ERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 32.3 bits (70), Expect = 0.11
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 156 LYMANLPPHFKENDVDQLLAKFGQV---------VSTRILRDTHGQSKGV----GFARME 202
+Y++ +PP+ N + Q+L+++G++ + R R +G +K V G+ E
Sbjct: 124 IYLSRIPPYMAPNKLRQILSQYGKIGRVYLTPESSAKRAQRLRNGGNKRVMYEEGWIEFE 183
Query: 203 SREKCEQIIQMFNGNPIPGAK 223
S+ + + ++ N N I G K
Sbjct: 184 SKRVAKSVAELLNTNQIGGKK 204
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 31.9 bits (69), Expect = 0.14
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 65 NLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVKG 124
N+Y +S + T ++L + + YG I S K + ++++ GFV + I++A AV G
Sbjct: 501 NVYFSHISDSLTTEELELILRQYGEIESIKYLKNRSS------GFVAYTNISNAMKAVNG 554
Query: 125 L 125
L
Sbjct: 555 L 555
Score = 31.5 bits (68), Expect = 0.19
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 155 NLYMANLPPHFKENDVDQLLAKFGQVVSTRIL 186
N+++ NLP + E ++++ KFG++ +IL
Sbjct: 300 NVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL 331
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 31.1 bits (67), Expect = 0.25
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 146 NRQQEQDPTNLYMANLPPHFKENDVDQLLAKFGQVVSTRILRDTH-GQSKGVGFARMES 203
N+ ++ LY+ LP F E + ++FG V+ R+ R+ G SK F ES
Sbjct: 97 NKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFES 155
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/58 (20%), Positives = 26/58 (44%)
Query: 66 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVK 123
LY+ L +K + +G ++ + ++ T K Y F++FE++ A +
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAE 164
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 31.1 bits (67), Expect = 0.25
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 156 LYMANLPPHFKENDVDQLLAKF---GQVVSTRILRD-THGQSKGVGFARMESREKCEQII 211
L++ NLP K++ V+ L F GQV S RI D T G+ KG F K + I
Sbjct: 94 LFVGNLP---KDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF-INPKTDVIS 149
Query: 212 QMFNGNPIPGAKEPLLVKF-ADGGNKKKSSYKQNESNGRTWRD 253
+ + + + ++ A GG K ++ + + R W++
Sbjct: 150 KALKFHHTIYKERKINIELTAGGGGKTEARMNKIKEKNRKWKE 192
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 66 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDF 112
L++ L +++ + L + G + S + DK + + KGY FV+F
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.9 bits (64), Expect = 0.57
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 65 NLYIRGLSPNTTD--KDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAV 122
NL+++ L N + L ++ +G I S +T KGYGFV F A A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 123 KGL 125
L
Sbjct: 480 NTL 482
Score = 26.6 bits (56), Expect = 5.3
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 147 RQQEQDPTNLYMANLPPHFKENDVDQLLAKFG-----QVVSTRILRDTHGQSKGV-GFAR 200
R ++ ++Y+ NLP + +D+ +L FG ++S + + T +S + F
Sbjct: 13 RSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFIT 72
Query: 201 MESREKCEQIIQMFNGNPIPG 221
E++ + I NG+ G
Sbjct: 73 FENKCSADNAIASLNGSSFQG 93
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 190 HGQSKGVGFARMESREKCEQIIQMFNGNPIPGAK 223
+G +G+ FA S E+ + ++Q+ NG I G +
Sbjct: 269 NGVFRGLAFANFHSPEEAKTVVQVLNGYEITGRR 302
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 59 EQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDF 112
E + ++Y+ + + T ++L GS+ + DK T KG+ +++F
Sbjct: 50 ESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 27.5 bits (58), Expect = 3.1
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 145 LNRQQEQDPTNLYMANLPPHFKENDVDQLLAKFGQVVSTRILRDTHGQSKGVGFARMESR 204
LN+ + + T +Y+ LP + ++ FG+++ T++ + S + FA+ R
Sbjct: 167 LNQFTDPNNTAVYVHQLPENITTQELRSYFLHFGEILYTQV----NNNSGRIVFAQ---R 219
Query: 205 EKCEQIIQMFNGNPIPGAK 223
EQ I N P+ G +
Sbjct: 220 YFAEQAINEMNNFPLHGVR 238
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 208 EQIIQMFNGNPIPGAKEPLLVKFADGGNKKKSSYKQNESNGRTW 251
EQ IQ F I E L+VK +G N K S + + G W
Sbjct: 568 EQSIQEFFSLAITNKCEGLMVKVLNGTNSKFPSTYEPDKRGEGW 611
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 98 DKNTNKCKGYGFVDFETIASAEAAVKGLQAKGVQAQM 134
+ N K + +GFVD++TI + A +G+ + ++++
Sbjct: 82 ENNLPKTQKFGFVDWKTILKSSAEFQGIVQRDPESRL 118
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 26.6 bits (56), Expect = 5.3
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 98 DKNTNKCK-GYGFVDFETIASAEAAVKGLQAKGVQAQMAKVGIWFLRRLNRQQEQDPTNL 156
+KN K G F DFE + A+ V+ L K Q+ K + +R+LN+ ++ T
Sbjct: 83 EKNGKKMSLGLVFADFENVDGADLCVQELDGK----QILKNHTFVVRKLNQLEKAFSTPD 138
Query: 157 YMANLPPHFKEND 169
+ FKE +
Sbjct: 139 EFSFEEREFKERE 151
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 26.6 bits (56), Expect = 5.3
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 66 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAAVKGL 125
+++ +SP TT+ L + + Y SII+ + K G F+ ++ AE AV+ L
Sbjct: 137 VHMDNISPVTTNGSLKESLRKYSSIIAVNIFSETGDLK---KGIAIFQDLSDAEQAVQYL 193
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 264 AVSGVYAGTMSAGGAGGECAGVYRSSG 290
A+ GVY G +A G G AGVY G
Sbjct: 429 AIRGVYYGIAAAIGKCGAIAGVYAFGG 455
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 5.3
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 200 RMESREKCEQIIQMFNGNPIPGAKEPLLVKFADGGNKKKSSYKQNESNGRTWRDNSETIT 259
+ +++++ Q+I+ N NP P P + A GN K+ +NES SE
Sbjct: 193 KTKTKKETIQVIESLN-NPTPPTDFPGAKEQASTGNAPKNPVNENESEDEEGLSLSEDGK 251
Query: 260 QAAMAVSGVYAGT 272
+ A G Y+ +
Sbjct: 252 KFANIDFGDYSSS 264
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 7.1
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 66 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNTNKCKGYG---FVDFETIASAEAAV 122
+Y+ L P+T++++L + ST+ + + KG G FV+FE I A A+
Sbjct: 428 IYVGNLPPSTSEEELKVL-------FSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEAL 480
Query: 123 KGLQ 126
K LQ
Sbjct: 481 KNLQ 484
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 7.1
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 66 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT--NKCKGYGFVDFET----IASAE 119
+Y+ GLS + DL +GS +S I++K+T + + +++F T +
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGS-VSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 120 AAVKGLQAKGVQAQMAKVGIWFLRRLNRQQEQDPTNLYMAN 160
+ + KG + ++ + ++L +L QQE+ +L N
Sbjct: 66 SYLSNATFKGSKLRIEEARPYYLVKL--QQEKKIADLQSTN 104
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 25.8 bits (54), Expect = 9.3
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 177 FGQVVSTRILRDTHGQSKGVGFARMESREKCEQIIQMFNGNP-IPGAKEPLLVKFADGGN 235
F VV L+D++G + + AR + + C + +N NP IP + ++ +
Sbjct: 355 FENVVRLVNLQDSNGDTSLLIAARNGAMD-CVNSLLSYNANPSIPNRQRRTASEYLLEAD 413
Query: 236 KKKSSYKQNESN 247
KK S Q+ SN
Sbjct: 414 KKPHSLLQSNSN 425
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 9.3
Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 15/119 (12%)
Query: 66 LYIRGLSPNTTDKDLVQMC----QMYGSIISTKAILDKNTNKCKGYGFVDFETIASAEAA 121
L++ L+ + ++++L Q +G ++ K + D + Y FV F+ A A
Sbjct: 81 LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQ---RPYSFVQFQNTDDASKA 137
Query: 122 VKGLQAKGVQAQMAKVGIWFLRRLNRQQEQDPTNLYMANLPPHFKENDVDQLLAKFGQV 180
+ Q + + R+ R + + A P+ + D+D LL +G+V
Sbjct: 138 LSEAQNTILDGRHI--------RIERAKVNRTIRISSAPHQPYITKKDIDNLLEPYGEV 188
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 9.3
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 90 IISTKA-ILDKNTNKCKGYGFVD-FETIASAEAAVKGLQAKGVQAQMAKVGIWFLRRLNR 147
I+S K +++ + + C+G+ D + S +K L G +++ F+ LN
Sbjct: 192 ILSEKEDLIELDISGCEGFHNADTLSRLVSRNRGLKELSMDGC-TELSH----FITFLNL 246
Query: 148 QQEQDPTNLYMANLPPHFKENDVDQLLAKFGQVVS 182
E D N P K++D++ + KF ++ S
Sbjct: 247 NCELDAMRALSLNNLPDLKDSDIELITCKFSKLNS 281
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 9.3
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 257 TITQAAMAVSGVYAGTMSAGGAGGEC-AGVYRSSGVYGV 294
TI + A+ VS AG+ +GGAG + S GVYG+
Sbjct: 29 TIKRRALPVSLTIAGSDCSGGAGIQADLKTMTSLGVYGM 67
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 9.3
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 110 VDFETIASAEAAVKGLQAKGVQAQMAKVGIWFLRRLNRQQEQDPTNLYMANLPPHFKEND 169
V + S+ A+ G KGV A + + N E T++++ N+PP +
Sbjct: 274 VKSQASVSSTASTTGQTVKGVNADQTQQPTAPYTQSNELLE---TSVFVKNIPPETSDVS 330
Query: 170 VDQLLAKFGQVVSTRILR 187
+ ++ FG V + R
Sbjct: 331 LKSAMSIFGPVKAIEFAR 348
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.132 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,184,669
Number of Sequences: 5004
Number of extensions: 42195
Number of successful extensions: 221
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 90
length of query: 356
length of database: 2,362,478
effective HSP length: 74
effective length of query: 282
effective length of database: 1,992,182
effective search space: 561795324
effective search space used: 561795324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)
- SilkBase 1999-2023 -