GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005357-TA|BGIBMGA005357-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR002343|Paraneoplastic
encephalomyelitis antigen
         (356 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    25   4.2  
AM085517-1|CAJ30215.1|  339|Anopheles gambiae putative angiotens...    23   9.8  

>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 253 DNSETITQAAMAVSGVYAGTMSAGGAGGECAGVYRSSGVYG 293
           D S+TI        G   G  S+GGAGG  +G   S G  G
Sbjct: 832 DPSDTIGAGGGGAGGPLRG--SSGGAGGGSSGGGGSGGTSG 870


>AM085517-1|CAJ30215.1|  339|Anopheles gambiae putative angiotensin
           converting enzymeprecursor protein.
          Length = 339

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 217 NP-IPGAKEPLLVKFADGGNKKKSSYKQNESNGRTWRDNS 255
           NP +     PLL  + DGG++ ++ Y  +  N   +RD +
Sbjct: 148 NPYVSDVDNPLL--YRDGGDRNRNRYVSDVENPLLYRDRT 185


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.132    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 267,997
Number of Sequences: 2123
Number of extensions: 9801
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 4
length of query: 356
length of database: 516,269
effective HSP length: 65
effective length of query: 291
effective length of database: 378,274
effective search space: 110077734
effective search space used: 110077734
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)