GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005356-TA|BGIBMGA005356-PA|IPR001128|Cytochrome P450,
IPR002401|E-class P450, group I
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    42   2e-04
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    31   0.35 
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    28   2.5  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   5.7  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 330 YFRACLKEALRLRH---VVPANLRRTHRDHIVGGYYIPKGIDVIAPNEYLSRSEKFYPQP 386
           Y RA +KE LRLR    +VP  +++     I   Y +PK   VI          K YP+P
Sbjct: 371 YTRAVVKECLRLRPPVLMVPYRVKKAFP--ITPDYTVPKDAMVIPTLYGALHDSKVYPEP 428

Query: 387 EEFIPERW 394
           E F P+RW
Sbjct: 429 ETFNPDRW 436


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 9/84 (10%)

Query: 176 ELTYKLEIRPSPWRYIATPAY---KMVIEAYDTQWEISMMYINHARKKLEQRG-YDIPEE 231
           EL  K  ++   W+Y   P     K V +  D + E  ++ ++   ++LE+ G YD  +E
Sbjct: 415 ELRDKYILQDPSWKYDRMPELLDGKNVADFVDPEIEAKLLALDEEEERLEREGYYDSDQE 474

Query: 232 -----EKSVLEKLIAIDEKVAVMM 250
                E+ VLEK   I EK  + M
Sbjct: 475 IEDADEEEVLEKASRIREKNKLTM 498


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/22 (50%), Positives = 18/22 (81%)

Query: 228 IPEEEKSVLEKLIAIDEKVAVM 249
           +P EE+ +LEKLI I +++AV+
Sbjct: 10  VPVEEQPILEKLIGIRQRLAVL 31


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 146 ALGSRLGCLKDSLDSDHPARRLMKSTRDIFELTYKLE 182
           A   RL CL  S       R++++ T+D+ E  Y++E
Sbjct: 692 ATNGRLPCLAISSSVTSYGRQMIEKTKDVVEKRYRIE 728


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.140    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,281
Number of Sequences: 5004
Number of extensions: 84216
Number of successful extensions: 186
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 4
length of query: 474
length of database: 2,362,478
effective HSP length: 75
effective length of query: 399
effective length of database: 1,987,178
effective search space: 792884022
effective search space used: 792884022
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)