GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005355-TA|BGIBMGA005355-PA|undefined
         (100 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    26   1.3  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    25   1.7  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    24   3.8  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    23   6.7  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    23   6.7  

>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 6  TGPVCPYGKDGIGCGGVNDENLCGGLVNYMKFDASGQYLFVCGDRVVRVLHNVCGYFT 63
          TGP+C  GKD +    +  ++    +    + +  G+Y++  GD V+  + ++  Y T
Sbjct: 7  TGPLCS-GKDAV-VEYLETKHGFNAIFRLPQLNEDGEYIYRTGDLVLGSVDDLISYLT 62


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 61  YFTTIESCKRLLKSKQTSATVERLHKTIQDCKQTLKKF 98
           Y+   +SC + L S+   A VER    + D     KKF
Sbjct: 365 YYYASDSCPKDLSSESQLAFVERCKLIVNDALILAKKF 402


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 64  TIESCKRLLKSKQTSATVE 82
           TIE CK + +S Q+S T E
Sbjct: 421 TIEECKHISQSLQSSLTAE 439


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 60  GYFTTIESCKRLLKSKQTSATVERLHKTIQDCKQTLKKFGK 100
           G ++TI+      K    SA +E LH+ +   +Q L   GK
Sbjct: 170 GMYSTIQQYIVTTKEAICSAVMEDLHEWLFSIRQKLPLVGK 210


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 65  IESCKRLLKS-KQTSATVERLHKTIQDCKQTLKKF 98
           +E  + L  S K+    VE+L+K I+D  + LK++
Sbjct: 391 LEELRHLATSAKEDFVKVEKLNKIIKDENENLKEY 425


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.141    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 457,738
Number of Sequences: 5004
Number of extensions: 15911
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 5
length of query: 100
length of database: 2,362,478
effective HSP length: 63
effective length of query: 37
effective length of database: 2,047,226
effective search space: 75747362
effective search space used: 75747362
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)