Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005355-TA|BGIBMGA005355-PA|undefined
(100 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 29 0.83
02_05_0200 - 26681968-26682181,26683269-26683383,26683495-266835... 27 2.5
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 27 3.3
08_01_0889 + 8753877-8754236,8754995-8755054,8755174-8755250,875... 26 4.4
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 26 4.4
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 26 5.8
04_04_0392 + 24891478-24891612,24891875-24893092 26 5.8
04_03_0897 - 20646750-20646918,20647927-20648038,20649650-206501... 26 5.8
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85... 26 5.8
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688... 25 7.7
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 28.7 bits (61), Expect = 0.83
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 59 CGYFTTIESCKRLLKSKQTSATVERLHKTIQDCKQTLKKFG 99
C Y + + S + Q A VER+ K I+ CK+TL G
Sbjct: 157 CFYRSFMFSYLEHILETQDKAEVERILKKIEQCKKTLADLG 197
>02_05_0200 -
26681968-26682181,26683269-26683383,26683495-26683531,
26683619-26683694,26683995-26684050,26684161-26684230,
26684320-26684624
Length = 290
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 60 GYFTTIESCKRLLKSKQTSATVERLHKTIQDCKQTL 95
G IESC ++ K + ++++ RL+ + QD Q L
Sbjct: 31 GCIAAIESCGKMGKGTEEASSLPRLNGSAQDALQLL 66
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 29 GGLVNYMKFDASGQYLFVCGDRVVRVLHNV 58
GG +N M+ GQ+L G+ VLH++
Sbjct: 3273 GGRINCMELSCCGQFLVCAGEHGQIVLHSM 3302
>08_01_0889 +
8753877-8754236,8754995-8755054,8755174-8755250,
8755481-8755622,8755736-8755772,8755852-8755921,
8756021-8756212,8756321-8756413,8756545-8756773,
8756861-8756944,8757041-8757192,8757279-8757375,
8757576-8757725,8757813-8757890,8757982-8758104,
8758169-8758315,8758418-8758472,8758807-8758874
Length = 737
Score = 26.2 bits (55), Expect = 4.4
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 39 ASGQYLFVCGDR------VVRVLHNVCGYFTTIESCK--RLLKSKQTSATVER 83
+ G Y++VCGD V RVLH + +++S K +KS QT V +
Sbjct: 668 SQGGYIYVCGDAKGMARDVHRVLHTIVQEQGSLDSSKAESFVKSLQTEDDVSK 720
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 2 GALGTGPVCPYGKD----GIGCGGVNDENLCGG 30
G GTG C G G GCGG ND+ GG
Sbjct: 53 GGGGTGDACSPGTAEGGCGGGCGGENDDTGNGG 85
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 54 VLHNVCGYFTTIESCKRLLKSKQTSATVERLHKTIQDCKQTLKK 97
V+ +VCG ++ KR + + S ER+ ++DCK + K
Sbjct: 413 VVCDVCGTKQLKKNFKRHQRMHEGSCVTERVRCHLKDCKLSFSK 456
>04_04_0392 + 24891478-24891612,24891875-24893092
Length = 450
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 15 DGIGCGGVNDENL-CGGLVNYMKFDAS 40
D C + ++ L CGGL+ Y FDA+
Sbjct: 371 DAYKCNNMVEQELPCGGLLIYQSFDAT 397
>04_03_0897 -
20646750-20646918,20647927-20648038,20649650-20650108,
20650237-20650330,20650449-20650525,20650637-20650688,
20650770-20650927,20651191-20651281,20651465-20652529
Length = 758
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 30 GLVNYMKFDASGQYLFVCG-DRVVRV 54
GL+ MKF SG YL G D +VR+
Sbjct: 256 GLIKVMKFSPSGWYLATGGEDCIVRI 281
>03_01_0107 +
849489-850652,850745-850835,850926-851083,851180-851231,
852373-852452,852540-852633,852711-853231,854087-854202,
854242-854293
Length = 775
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 30 GLVNYMKFDASGQYLFVCG-DRVVRVLHNVCG 60
G + MKF + GQYL G D VVRV V G
Sbjct: 272 GAIVTMKFSSDGQYLATGGEDGVVRVWRVVEG 303
>01_03_0103 - 12567986-12568141,12568307-12568442,12568751-12568824,
12568932-12569175,12569480-12569766,12570618-12571103,
12571348-12571459,12571540-12571745,12573071-12573276,
12573831-12574162,12574284-12574825,12574967-12576308,
12576386-12576457,12578438-12578505,12579011-12580174
Length = 1808
Score = 25.4 bits (53), Expect = 7.7
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 23 NDENLCGGLVNYMKFDASGQYLFVCGDRVVRVL--HNVCGYFTTIES-------CKRLLK 73
ND + C V Y K S QY+ V + V+ V + C + ES + LL+
Sbjct: 933 NDSSSCCSSVKYNKSPCSNQYI-VPPESVLSVAPDFDFCSFLECFESDDSSPTGYQELLR 991
Query: 74 SKQTSATVERLH 85
KQ S +V H
Sbjct: 992 WKQKSCSVNEYH 1003
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.141 0.448
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,946
Number of Sequences: 37544
Number of extensions: 123076
Number of successful extensions: 244
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 11
length of query: 100
length of database: 14,793,348
effective HSP length: 71
effective length of query: 29
effective length of database: 12,127,724
effective search space: 351703996
effective search space used: 351703996
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)
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