GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005355-TA|BGIBMGA005355-PA|undefined
         (100 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   0.54 
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    19   8.8  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    19   8.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   8.8  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
          protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 0.54
 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 8/46 (17%)

Query: 4  LGTGPVCPYGKDGIG----CGGVN----DENLCGGLVNYMKFDASG 41
          LG G  C   K GI     CG V      + LCGG  NY+   A G
Sbjct: 37 LGCGDSCHKCKYGIAMSSACGIVQCAKGPDELCGGPQNYLGICAEG 82


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding
          protein protein.
          Length = 120

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 80 TVERLHKTIQDCKQTLKK 97
          T+E L KTI++ ++   K
Sbjct: 2  TIEELKKTIKNLRKVCSK 19


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 29  GGLVNYMKFDASGQYLFVC 47
           G +   M  D  G Y F+C
Sbjct: 440 GYIYQKMVADVVGDYFFIC 458


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 29  GGLVNYMKFDASGQYLFVC 47
           G +   M  D  G Y F+C
Sbjct: 440 GYIYQKMVADVVGDYFFIC 458


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.141    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,607
Number of Sequences: 429
Number of extensions: 1142
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 100
length of database: 140,377
effective HSP length: 49
effective length of query: 51
effective length of database: 119,356
effective search space:  6087156
effective search space used:  6087156
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.5 bits)
S2: 38 (19.4 bits)