GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005354-TA|BGIBMGA005354-PA|IPR011046|WD40-like
         (102 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   4.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   6.9  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    20   6.9  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    19   9.1  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    19   9.1  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 23  VVTYGSVILWDIRDLSQKEHRTLRVNIEF 51
           V  +G+V  +D  DL +  +   R+N E+
Sbjct: 107 VTMHGTVQSYDKYDLLENVNNAARINWEY 135


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 5/16 (31%), Positives = 13/16 (81%)

Query: 56   HVAWSPDSKAFIVHTV 71
            +V +SP+ + F++H++
Sbjct: 1069 YVCYSPNDEDFVLHSL 1084


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 72  RENNIIVYKIEKK 84
           R NN  VY++EK+
Sbjct: 291 RGNNFPVYQVEKR 303


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 19.4 bits (38), Expect = 9.1
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 37  LSQKEHRTLRVNIEFDHASHVAWSPDSKAFIVHTVRENNIIVY 79
           +SQ++   L++    +   H+ W+   K F+   +     I +
Sbjct: 83  ISQQKTSKLKIYKWNNQILHILWTSYKKVFMKDNILRQYFITF 125


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 19.4 bits (38), Expect = 9.1
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 37  LSQKEHRTLRVNIEFDHASHVAWSPDSKAFIVHTVRENNIIVY 79
           +SQ++   L++    +   H+ W+   K F+   +     I +
Sbjct: 66  ISQQKTSKLKIYKWNNQILHILWTSYKKVFMKDNILRQYFITF 108


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,341
Number of Sequences: 429
Number of extensions: 917
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 102
length of database: 140,377
effective HSP length: 49
effective length of query: 53
effective length of database: 119,356
effective search space:  6325868
effective search space used:  6325868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.5 bits)
S2: 38 (19.4 bits)