GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005353-TA|BGIBMGA005353-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold, IPR013520|Exonuclease, RNase T and
DNA polymerase III, IPR006055|Exonuclease
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...   104   2e-23
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    87   5e-18
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...    50   4e-07
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    36   0.011
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    29   1.3  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    27   2.9  

>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score =  104 bits (249), Expect = 2e-23
 Identities = 53/146 (36%), Positives = 78/146 (53%), Gaps = 1/146 (0%)

Query: 177 LELASIAVIAADGRLVYRSLVKPSSPVVDHNTRFSGIRPRDLARATKTLRDVQNDILGFV 236
           LE+A + ++     ++Y   VKP SPV D+ T++SGI    L   T  L DVQ+ +   V
Sbjct: 282 LEIARVTIVDMKSEVIYDEFVKPESPVTDYVTQYSGITEEKLRNVTTVLSDVQSYLKKTV 341

Query: 237 GTDTILIGHALENDLRALKLLHSAVVDTCALYPHARGFPMXXXXXXXXXXXXXXTVQR-G 295
             +T+L+GH+L +DL  LK  H  ++DT  +Y H RG P                +Q+ G
Sbjct: 342 DNNTVLLGHSLNSDLNCLKFTHPHIIDTANIYNHTRGPPSKPSLKWLATKWLRREIQKAG 401

Query: 296 SNGHSPLEDARAAMDLVLLKVQQEQA 321
           + GH   EDA A +DL+ LKV+   A
Sbjct: 402 ALGHDSAEDALACVDLLKLKVKNGPA 427


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 86.6 bits (205), Expect = 5e-18
 Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 172 YVRARLELASIAVIAADGRLVYRSLVKPSSPVVDHNTRFSGIRPRDLARATKTLRDVQND 231
           Y    +ELA + V+A +  ++    +KP   ++  NTRFSGI       +  T+  +   
Sbjct: 391 YTTNGMELARLTVVAKES-IIMDVFIKPKGKILSLNTRFSGIHDAKELESGITMDQMYIK 449

Query: 232 I--LGFVGTDTILIGHALENDLRALKLLHSAVVDTCALYPHARGFPMXXXXXXXXXXXXX 289
           I  LG +  +TILIGH LENDL A++L+H  V+DT  L+ HARG P              
Sbjct: 450 IKELG-MNKNTILIGHGLENDLNAMRLIHKRVIDTALLFTHARGPPFRYSLKYLTKKYLG 508

Query: 290 XTVQRGSNGHSPLEDARAAMDLVLLKVQQEQA 321
            T+Q  ++ H   EDA +A+ LV  K +  ++
Sbjct: 509 TTIQ--TSTHDSEEDAVSALQLVFYKTKSNES 538


>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 50.4 bits (115), Expect = 4e-07
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 4/142 (2%)

Query: 179 LASIAVIAADGRLVYRSLVKPSSPVVDHNTRFSGIRPRDLARATKTLRDVQNDILGFVGT 238
           LA ++++   G +VY + V+P   V D  T  SG++   + R   +   VQ ++   +  
Sbjct: 110 LARVSIVNYHGHVVYDTYVRPKEKVTDWRTWVSGVKSFHM-RDAPSFEKVQAEVAKIL-D 167

Query: 239 DTILIGHALENDLRALKLLH-SAVVDTCALYPHARGFPMXXXXXXXXXXXXXXTVQRGSN 297
           + +L+GHA+ NDL+ L L H   ++   + +   R                       S 
Sbjct: 168 NRVLVGHAVHNDLKVLLLSHPRRMIRDTSRFSGYRKLAKGRTPGLKKLAEVILGRDIQSG 227

Query: 298 GHSPLEDARAAMDLVLLKVQQE 319
            HS ++DA+A M+L   KV++E
Sbjct: 228 QHSSVQDAQATMEL-YKKVKKE 248


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1115

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 11/105 (10%)

Query: 175  ARLELASIAVIAADGR---LVY-RSLVKPSSPVVDHNTRFSGIRPRDLARATKT-----L 225
            ++L LA ++V+  +G    L +    V     V D+ T +SGI P DL           L
Sbjct: 915  SKLSLARVSVLRGEGPNKGLPFIDDYVATDDKVTDYLTEYSGIHPGDLDPDRSPYNVVPL 974

Query: 226  RDVQNDILGFVGTDTILIGHALENDLRALKLL--HSAVVDTCALY 268
            +     +   V    I +GH L+ D R + LL     VVDT  L+
Sbjct: 975  KVAYKKLRLLVNAGCIFVGHGLQKDFRIINLLVPPEQVVDTVDLF 1019


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 76  SHSDSGRGSLGSTPRSDSDEEADAVEHLCVRCD 108
           SH D   G +   P  D +E AD VEH CV+ D
Sbjct: 188 SHEDGAHG-VHEHPVYDIEECADGVEHECVKDD 219


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 97  ADAVEHLCVRCDKMFRMTRD 116
           A+A+EH CVRC +   MT+D
Sbjct: 366 ANALEHACVRCVEKGIMTKD 385


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,340,110
Number of Sequences: 5004
Number of extensions: 48644
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 8
length of query: 344
length of database: 2,362,478
effective HSP length: 73
effective length of query: 271
effective length of database: 1,997,186
effective search space: 541237406
effective search space used: 541237406
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)