GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005353-TA|BGIBMGA005353-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold, IPR013520|Exonuclease, RNase T and
DNA polymerase III, IPR006055|Exonuclease
         (344 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.1  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 70  PEFVPGSHSDSGRGSLGSTPRSDSDEEADAVEHL 103
           P   P S  +SGR     TPR +S  + D    +
Sbjct: 396 PRQTPPSRKESGRRRRRRTPRYNSVSKIDRASRI 429


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 228 VQNDILGFVGTDTILIGHALE 248
           +QN+++GF+G  T L   +LE
Sbjct: 873 LQNNLIGFIGNLTFLPLRSLE 893


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,161
Number of Sequences: 429
Number of extensions: 2720
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 344
length of database: 140,377
effective HSP length: 58
effective length of query: 286
effective length of database: 115,495
effective search space: 33031570
effective search space used: 33031570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)