GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005351-TA|BGIBMGA005351-PA|IPR011046|WD40-like,
IPR000219|DH
         (1187 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    46   2e-05
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    46   3e-05
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    46   4e-05
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    46   4e-05
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    44   1e-04
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    37   0.019
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    30   1.7  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    29   2.9  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    29   5.1  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    29   5.1  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    28   6.7  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    28   6.7  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    28   8.9  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    28   8.9  

>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 13/163 (7%)

Query: 123 RHVVAAIIHSENSYVATLQRLVNDYKKPLEESSPAILNASKIQTLFHRLPDILQCHLHFR 182
           R V A +  +E  Y+  L+ L N Y   L++    IL+   I ++F  L +IL     F 
Sbjct: 230 RRVTAELYETELKYIQDLEYLSN-YMVILQQKQ--ILSQDTILSIFTNLNEILDFQRRFL 286

Query: 183 TALADCAQTWDRDEKIGEVFLSAFSKAVVLDVYSDFINNFSVAMELAKMESKRKSALADF 242
             L         ++++G +F+ A  +     VY  F  NF  A +L      +   +A+ 
Sbjct: 287 VGLEMNLSLPVEEQRLGALFI-ALEEG--FSVYQVFCTNFPNAQQLIIDNQNQLLKVANL 343

Query: 243 FKVKQISAHDRLSFFGLMVKPVQRFPQFIMFLQDLLKHTPPGH 285
            +              L++KP+QR  ++ + L  LLK TP G+
Sbjct: 344 LEPSY-------ELPALLIKPIQRICKYPLLLNQLLKGTPSGY 379


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 44/180 (24%), Positives = 85/180 (47%), Gaps = 20/180 (11%)

Query: 121 RRRHVVAAIIHSENSYVATLQRLVNDYKKPLEE---SSPAILNASKIQTLF----HRLPD 173
           +++ ++  ++ +E++YV  L+ LVNDY  PL +   SS  +L   ++ TLF    ++L  
Sbjct: 230 KKKSLLIEMMETESTYVERLRHLVNDYALPLRDLAKSSKKLLGLYELNTLFPPCLNKLIQ 289

Query: 174 ILQCHLHFRTALADCAQTWDRDE-KIGEVFLSA--------FSKAVVLDVYSDFINNFSV 224
           +    L    A+       D DE K  E+ L          F+ +     Y +  N+F  
Sbjct: 290 LNSAFLDEFEAIMSDLNFEDIDEKKFEEIDLRLACCFESHFFAFSQHYPRYLEQSNDFGN 349

Query: 225 AMELAKMESKRKSALADFFKVKQISAHDRLSFFGLMVKPVQRFPQFIMFLQDLLKHTPPG 284
            +++A    K      +F    +++A+  +    L+++PVQR P++ +FL  ++  T  G
Sbjct: 350 VLKMASKIPK----FVEFHDQVKLNANMNVGLSQLIMEPVQRIPRYSLFLDQIILLTQEG 405


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 14/175 (8%)

Query: 121 RRRHVVAAIIHSENSYVATLQRLVNDYKKPLEESS--PAILNASKIQTLFHRLPDILQCH 178
           +R+ V+  +I++E  +V  L+ L + + KPL  SS  P       I+T+F    ++   +
Sbjct: 621 KRQEVICEVIYTERDFVKDLEYLRDYWIKPLWASSCIPERKKEKFIRTVFLNALEVQAVN 680

Query: 179 LHFRTALADCAQTWDRDEKIGEVFLSAFSKAVVLDVYSDFINNFSVAMELAKME-SKRKS 237
                AL          + I ++FL    K      +  FI  +       K E  K KS
Sbjct: 681 SKLAEALTKRQNYKPIVDNIADIFLEHVPK------FEPFIR-YGAGQLYGKYEFEKEKS 733

Query: 238 ALADFFK----VKQISAHDRLSFFGLMVKPVQRFPQFIMFLQDLLKHTPPGHADR 288
           +   F K    V+++    +L   G + KP  R  ++ + L+ +LK+T  G+ D+
Sbjct: 734 SNPAFAKFVSDVERLKESRKLELNGYLTKPTTRLARYPLLLEAVLKYTDEGNPDK 788


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 4/169 (2%)

Query: 121 RRRHVVAAIIHSENSYVATLQRLVNDYKKPLEESS--PAILNASKIQTLFHRLPDILQCH 178
           +R+ ++  +I++E  +V  L+ + + + KPL  S+  P       I+ +FH +  I   +
Sbjct: 447 KRQEIIFEVIYTERDFVRDLEYIRDFWIKPLSTSNVIPENNRQQFIRCVFHNIMQIHAVN 506

Query: 179 LHFRTALADCAQTWDRDEKIGEVFLSAFSKAVVLDVYSDFINNFSVAMELAKMESKRKSA 238
                AL            IG++FL    K      Y    N      E  + +S  ++ 
Sbjct: 507 SRLSNALNRTQTLQPVVNTIGDLFLDYVPKFEPFIKYG--ANQAIAKFEFEREKSTNRNF 564

Query: 239 LADFFKVKQISAHDRLSFFGLMVKPVQRFPQFIMFLQDLLKHTPPGHAD 287
                +V+++    +L   G + KP  R  ++ + L  +LK+T   + D
Sbjct: 565 ANYVHEVERLRESRKLELNGYLTKPTTRLARYPLLLSGVLKYTDKDNPD 613


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 9/170 (5%)

Query: 119 QLRRRHVVAAIIHSENSYVATLQRLVNDYKKPLEESSPAILNASK----IQTLFHRLPDI 174
           ++ R++ +  +I  E+ YVA L  L   ++  + +   AI+ +++    IQ++F  +  I
Sbjct: 463 EIARQNNIHELICKESDYVADLNTLAELFRDGIVQQQDAIVPSNRVADFIQSVFGNVESI 522

Query: 175 LQCHLHFRTALADCAQTWDRD--EKIGEVFLSAFSKAVVLDVYSDFINNFSVAMELAKME 232
            Q H           +         IG++ L     A     Y ++   F +A E  K+E
Sbjct: 523 RQLHSRLFLPQLIMRERLQGPVVSIIGDILLEWIHAAK--SSYINYAKQFPLADETYKLE 580

Query: 233 SKRKSALADFFKVKQISAH-DRLSFFGLMVKPVQRFPQFIMFLQDLLKHT 281
            +R +  A +    +      RL F   + +P QR  ++ + L  +LKHT
Sbjct: 581 CQRNTYFARWLAACRSDPRCRRLDFQHFLQRPTQRLQRYTLELDTILKHT 630


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 40/181 (22%), Positives = 83/181 (45%), Gaps = 17/181 (9%)

Query: 121 RRRHVVAAIIHSENSYVATLQRLVNDYKKPLEESSPAILNASKIQTLFHRLPDILQCHLH 180
           +R +++  ++ +E +Y+  L  +   Y   ++E S   LN    QT+F  +  +L   + 
Sbjct: 311 KRANLIKELVTTEAAYLNDLIAIQQSYGLRVKECSA--LNPVDAQTVFGDIESLLTFTVE 368

Query: 181 FRTALADCAQ-TW--DRDEKI--------GEVFLSAFSKAVVLDVYSDFINNF-SVAMEL 228
           F + L    + +W  + D ++        G +FL + S+  +  +Y+ + N   SV   +
Sbjct: 369 FHSRLYQAGEGSWRVNLDTQLIDPLPCNLGLIFLESLSE--IGQIYTGYCNRQDSVFKII 426

Query: 229 AKMESKRKSALADFFKVKQISAHDRLSFFG-LMVKPVQRFPQFIMFLQDLLKHTPPGHAD 287
            K   K  +A       K +  +      G L++KP+QR  ++ + LQ ++  TP   ++
Sbjct: 427 TKWREKPATASWIMEGDKIVQKYTNAWDLGSLIIKPLQRLLKYPLLLQKIIDVTPESSSE 486

Query: 288 R 288
           R
Sbjct: 487 R 487


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 904 RDIDVNAVRRNLSNARALADVNIVHEFKEEDSKEDCDKPKLERRISEETSPYR 956
           +D+DV+ ++RN S +R  +    +   KE    +  DK ++++   E+  P R
Sbjct: 776 KDVDVDFLKRNTSLSRRKSMPAEIKRHKESSETKPVDKEEVKKNEKEKDDPMR 828


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 199 GEVFLSAFSKAVVLDVYSDFINNFSVAMELAKMESKRKSALADFFKVKQISAHDRLSFFG 258
           G VF++  +KAV   + SD++   +V ME    +   K  LA F +++ +  H  +   G
Sbjct: 116 GRVFMTHPTKAVCKWLLSDYVKVSNVGMEDQLYD--EKDLLAAFDRIEAVDYHSTIEVEG 173

Query: 259 LMVKP 263
           +   P
Sbjct: 174 IKFTP 178


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 471 VSRMADLAASLKTPYPELAPEMFKTLLQSIQQSIQKK 507
           + RMAD    L + +P  +P MF   L ++Q S+ ++
Sbjct: 610 LDRMADFFLELPSRFPSCSPRMFLLCLGALQTSVLRE 646


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 148  KKPLEESSPAILNASKIQTLFHRLPDILQCHLHFRTALADCAQTWDRDEKIGEVFLSAFS 207
            K   EE S  +         F  L     C   F T+LA C+       K G  FL  F 
Sbjct: 1648 KYQFEEGSARLSCKVFFAEQFSALRRACGCEETFVTSLARCSLWESSGGKSGSAFLKTFD 1707

Query: 208  KAVVLDVY----SDFINNFSVA 225
            K  +L V     SD + NF+ A
Sbjct: 1708 KKYILKVLSRLESDSLLNFAPA 1729


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 466 HDYETVSRMADLAASLKTPYPELAPEMFKTLLQSIQQSIQKKD 508
           H++ + S M  ++    +PYP L P    + L+S + S+  +D
Sbjct: 32  HEFSSSSFMDPVSLFCSSPYPNLPPHSRSSSLESKKPSVASQD 74


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 216 SDFINNFSVAMELAKMESKRKSALADFFKVKQISAHDRLSFFGLMVKPVQRFPQFIMFLQ 275
           S F  N S A  L K+     + L DF +V Q+       F    ++  Q  P+ +MFL 
Sbjct: 447 SFFQTNSSCAEALVKVIPHYHNKLIDFSQVLQLVFSASEKF---PIQENQPLPEQLMFLS 503

Query: 276 DLLKHTP 282
           +L K TP
Sbjct: 504 NLEKQTP 510


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 174 ILQCHLHFRTALADCAQTWDRDEKIGEV--FLSAFSKAVVLDVYSDFINNFSVAMELAKM 231
           I + +  +R+ +  C Q ++ +E    +  +L  F       +Y  F+ N  +A+EL   
Sbjct: 788 IAEKYSDYRSLVELCYQLYEDNELTDALNNYLDLFGIKFAFILYDYFVEN-GMALELLNS 846

Query: 232 ESKRKSALADFFK 244
           +   KS L  FFK
Sbjct: 847 DRFNKSYLKQFFK 859


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 878 VGGHIAGSYHAHAGPVTFLLSLLPETRDI 906
           + GH+ G YH H+G    L+ ++    D+
Sbjct: 751 ITGHVYGGYHKHSGSGGHLVDMMKNISDV 779


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,266,139
Number of Sequences: 5004
Number of extensions: 155626
Number of successful extensions: 372
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 360
Number of HSP's gapped (non-prelim): 18
length of query: 1187
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1106
effective length of database: 1,957,154
effective search space: 2164612324
effective search space used: 2164612324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)