GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005351-TA|BGIBMGA005351-PA|IPR011046|WD40-like,
IPR000219|DH
         (1187 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   8.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   8.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   8.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 14/62 (22%), Positives = 25/62 (40%)

Query: 125 VVAAIIHSENSYVATLQRLVNDYKKPLEESSPAILNASKIQTLFHRLPDILQCHLHFRTA 184
           V+  + HS  S    ++ ++   K   E+           Q L+    D    H+H +TA
Sbjct: 224 VICKLSHSNASVAGGMEMILLCEKVAKEDIQVRFFEEKDGQVLWEGFGDFQPVHVHKQTA 283

Query: 185 LA 186
           +A
Sbjct: 284 IA 285


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 14/62 (22%), Positives = 25/62 (40%)

Query: 125 VVAAIIHSENSYVATLQRLVNDYKKPLEESSPAILNASKIQTLFHRLPDILQCHLHFRTA 184
           V+  + HS  S    ++ ++   K   E+           Q L+    D    H+H +TA
Sbjct: 224 VICKLSHSNASVAGGMEMILLCEKVAKEDIQVRFFEEKDGQVLWEGFGDFQPVHVHKQTA 283

Query: 185 LA 186
           +A
Sbjct: 284 IA 285


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 220 NNFSVAMELAKMESKRKSA 238
           NNFS++ +LAK   ++K+A
Sbjct: 316 NNFSLSRKLAKFAKEKKAA 334


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,030
Number of Sequences: 429
Number of extensions: 9481
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 3
length of query: 1187
length of database: 140,377
effective HSP length: 65
effective length of query: 1122
effective length of database: 112,492
effective search space: 126216024
effective search space used: 126216024
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)