GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005349-TA|BGIBMGA005349-PA|undefined
         (75 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL773541-6|CAI18455.1|  347|Homo sapiens diffuse panbronchioliti...    28   4.0  
AL669830-7|CAI18007.2|  507|Homo sapiens diffuse panbronchioliti...    28   4.0  
AL662854-16|CAI17438.2|  507|Homo sapiens diffuse panbronchiolit...    28   4.0  

>AL773541-6|CAI18455.1|  347|Homo sapiens diffuse panbronchiolitis
           critical region protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 33  AEPPLHGVRTTTLNHRRTTAIWRKIPLHASKEISQRRRTT 72
           AEP  H  RTT L H + T +  K   H  K  S   +TT
Sbjct: 97  AEPIKHAKRTT-LAHEKMTQVTEKSTEHPEKTTSTTEKTT 135


>AL669830-7|CAI18007.2|  507|Homo sapiens diffuse panbronchiolitis
           critical region 1 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 33  AEPPLHGVRTTTLNHRRTTAIWRKIPLHASKEISQRRRTT 72
           AEP  H  RTT L H + T +  K   H  K  S   +TT
Sbjct: 257 AEPIKHAKRTT-LAHEKMTQVTEKSTEHPEKTTSTTEKTT 295


>AL662854-16|CAI17438.2|  507|Homo sapiens diffuse panbronchiolitis
           critical region 1 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 33  AEPPLHGVRTTTLNHRRTTAIWRKIPLHASKEISQRRRTT 72
           AEP  H  RTT L H + T +  K   H  K  S   +TT
Sbjct: 257 AEPIKHAKRTT-LAHEKMTQVTEKSTEHPEKTTSTTEKTT 295


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.128    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,906,394
Number of Sequences: 224733
Number of extensions: 308763
Number of successful extensions: 723
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 15
length of query: 75
length of database: 73,234,838
effective HSP length: 54
effective length of query: 21
effective length of database: 61,099,256
effective search space: 1283084376
effective search space used: 1283084376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)