GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005349-TA|BGIBMGA005349-PA|undefined
         (75 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.54 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    19   5.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    19   6.7  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    19   6.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 0.54
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 32   IAEPPLHGVRTTTLNHRRTTAIWRKIPLHASKEI 65
            + E P H    TTL  +     W   PL A+  +
Sbjct: 1080 VPEQPPHDTTCTTLTSQTIRISWMSPPLSAANGV 1113


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 19.4 bits (38), Expect = 5.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 30  VSIAEPPLHGVRTTTLNHRRTTAIWRKIPLHAS 62
           V +  P LH     T NH +   I   I ++A+
Sbjct: 148 VPVCAPKLHVFDLKTSNHLKQIEIPHDIAVNAT 180


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
          RJP57-1 protein.
          Length = 544

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 6  DVSKNAHIKTKAKRHTPIHPFTV 28
          D  ++A IK+    HT  +PF V
Sbjct: 53 DERRDAAIKSGEFDHTKNYPFDV 75


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
          protein.
          Length = 74

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query: 8  SKNAHIKTKAKRHTPIHPF 26
          +++ H+KT  + HT   P+
Sbjct: 20 TRDHHLKTHMRLHTGEKPY 38


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.128    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,922
Number of Sequences: 429
Number of extensions: 664
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 75
length of database: 140,377
effective HSP length: 46
effective length of query: 29
effective length of database: 120,643
effective search space:  3498647
effective search space used:  3498647
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.6 bits)
S2: 36 (18.6 bits)