GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005348-TA|BGIBMGA005348-PA|IPR009041|Proteinase
inhibitor, PMP and SGCI, IPR010895|CHRD, IPR001007|von Willebrand
factor, type C
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   7.7  

>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 642 GSSWHPYLVP----GGYDTCAICTCNYITKQIHCPRVQCPPLRCSEKDA 686
           GSSWH            D+  + T  +IT+ +    V+ PPL   E+DA
Sbjct: 86  GSSWHTASENVNDLAANDSTRVQTPEFITQTMEDENVEVPPLERDERDA 134


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,624,330
Number of Sequences: 5004
Number of extensions: 156098
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 1
length of query: 802
length of database: 2,362,478
effective HSP length: 79
effective length of query: 723
effective length of database: 1,967,162
effective search space: 1422258126
effective search space used: 1422258126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)