GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005348-TA|BGIBMGA005348-PA|IPR009041|Proteinase
inhibitor, PMP and SGCI, IPR010895|CHRD, IPR001007|von Willebrand
factor, type C
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0719 - 5924088-5924362,5924458-5924605                           35   0.29 
06_03_0775 - 24510624-24510655,24511228-24512179                       33   0.68 
01_01_0195 + 1697447-1697691,1698150-1698808,1699754-1701570,170...    32   1.6  
05_04_0278 - 19694590-19694757,19696331-19696391,19696503-196966...    31   3.6  
02_02_0404 + 9876703-9877314,9877599-9877838,9877951-9878073,987...    31   4.8  
01_01_0118 - 871481-872606,872795-872950,873051-873817                 31   4.8  
02_03_0185 - 16134426-16134881                                         30   8.4  

>11_01_0719 - 5924088-5924362,5924458-5924605
          Length = 140

 Score = 34.7 bits (76), Expect = 0.29
 Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 516 PQISVPTSCLPAVPGPIDNELSPKYPPSP 544
           PQ+S P   LP VP P+D+E  P  PPSP
Sbjct: 82  PQLSRPNRDLPTVPSPLDHEPVPT-PPSP 109


>06_03_0775 - 24510624-24510655,24511228-24512179
          Length = 327

 Score = 33.5 bits (73), Expect = 0.68
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 512 RTRAPQISVPTSCLPAVPGPIDN------ELSPKYPPSPSADQLSDYGLYRL 557
           + +A  I+ P  CL ++   +D       E+ P  PPSP A  + D  LYRL
Sbjct: 189 KQKAKAITAPPFCLDSLLASLDGACWTMEEVEPPPPPSPPASSMGDADLYRL 240


>01_01_0195 +
           1697447-1697691,1698150-1698808,1699754-1701570,
           1701700-1701771
          Length = 930

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 574 IWTDTETCSKCVCVMGTPKCEPVQCPHVNCLVPTILPPGHCCPICTNTTSAAWSE 628
           +W D    S   C   T KCE +   H+ C +P    P  CC  C N T+  W E
Sbjct: 445 LWIDMNEASN-FC---TGKCE-IPTTHL-CPLPNTTTPWVCCLDCKNLTNTRWDE 493


>05_04_0278 -
           19694590-19694757,19696331-19696391,19696503-19696658,
           19696740-19696912,19698199-19698276,19698399-19698575,
           19698924-19699001,19700573-19700692,19700803-19701183
          Length = 463

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 80  QVLLEQSLKKIPGIHATYEEKTDKLCGVWRRVPRQYKTLLRDGDLHVALLWG 131
           Q +    ++K+     +YE++T      + R P+QYK L    D  +A  WG
Sbjct: 320 QAIKMWDIRKMTSNADSYEDRTSNWDYRYSRYPQQYKQLKHPHDQSIATYWG 371


>02_02_0404 +
           9876703-9877314,9877599-9877838,9877951-9878073,
           9878195-9878374
          Length = 384

 Score = 30.7 bits (66), Expect = 4.8
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 310 PAAPSPEGLALVYIDKEGSLVY-DIQMENVGVVDPKITLVE----EQGKRHLQVEILDTR 364
           P    P G    Y+ +E  + Y D   +  G+     T VE    +QGK+H  V   DT 
Sbjct: 62  PHMAYPSGTP-TYVPRESFVEYLDSYTDRFGIQPRYDTSVESATYDQGKKHWAVLAQDTD 120

Query: 365 VGVLARPSAR 374
            GV+AR +AR
Sbjct: 121 TGVVARLTAR 130


>01_01_0118 - 871481-872606,872795-872950,873051-873817
          Length = 682

 Score = 30.7 bits (66), Expect = 4.8
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 587 VMGTPKCEPVQCPHVNCLVPTILPPGHCCPI------CTNTTSAAWSENGSCVLAGQSYA 640
           + G P C P  C H++ +       G+ C +      CT+  +    +NG+  + G  Y+
Sbjct: 37  IHGIPACPPFTCGHLSKVASPFHRRGYECGVASYELTCTDDKATIQIDNGTYFVTGIDYS 96

Query: 641 PGSSW 645
             + W
Sbjct: 97  DSTFW 101


>02_03_0185 - 16134426-16134881
          Length = 151

 Score = 29.9 bits (64), Expect = 8.4
 Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 11/63 (17%)

Query: 453 SRSRSTWWLETHA----GGED------NARELGGDEGWVLE-PSAAELVAIHIGAAFLEL 501
           +R R TWW E  A    GG D        RE G DE    + P+AA +V   +G AF   
Sbjct: 54  ARERRTWWHEVEAEVARGGRDGDGRRGRGRERGLDERKKRKWPAAAAMVLWWVGPAFTTA 113

Query: 502 RAQ 504
           R Q
Sbjct: 114 RRQ 116


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.135    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,320,296
Number of Sequences: 37544
Number of extensions: 1175218
Number of successful extensions: 2745
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2740
Number of HSP's gapped (non-prelim): 9
length of query: 802
length of database: 14,793,348
effective HSP length: 88
effective length of query: 714
effective length of database: 11,489,476
effective search space: 8203485864
effective search space used: 8203485864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)