Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005347-TA|BGIBMGA005347-PA|IPR006688|ADP-ribosylation
factor, IPR005225|Small GTP-binding protein domain, IPR001806|Ras
GTPase, IPR006689|ARF/SAR superfamily
(182 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 340 9e-95
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 252 2e-68
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 142 3e-35
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 104 7e-24
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 51 1e-07
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 50 3e-07
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 44 1e-05
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 43 3e-05
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 40 2e-04
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 40 2e-04
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 39 4e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 39 4e-04
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 39 5e-04
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 38 0.001
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 37 0.002
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 37 0.002
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 34 0.014
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 33 0.019
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 33 0.025
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 33 0.033
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 31 0.10
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 27 1.2
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M... 27 2.2
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 2.9
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 2.9
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 2.9
SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces... 26 2.9
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 3.8
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 25 5.0
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 25 6.6
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 6.6
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 6.6
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 6.6
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 6.6
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 25 6.6
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 25 6.6
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 25 8.7
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 340 bits (835), Expect = 9e-95
Identities = 158/179 (88%), Positives = 168/179 (93%)
Query: 1 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MG + LF+ LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+N
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRERI EA EEL RML+EDELRDA+
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDAL 120
Query: 121 LLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 179
LL+FANKQDLPNAMNAAEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLS LKN
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 252 bits (618), Expect = 2e-68
Identities = 118/174 (67%), Positives = 137/174 (78%)
Query: 5 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 64
F+ F LF KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFN 68
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIF 124
VWDVGGQDKIRPLWRHYF T+GLIFVVDS D RI EAR+EL R++S+ E+RD +LL+
Sbjct: 69 VWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVL 128
Query: 125 ANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 178
ANKQDLP A++ A+ITD L L L++R W +Q TCA +GDGL EGL WLS K
Sbjct: 129 ANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 142 bits (344), Expect = 3e-35
Identities = 66/165 (40%), Positives = 108/165 (65%), Gaps = 2/165 (1%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDK 73
++E+R+L++GLD AGKTTIL K L E V + PT GF + T+E + + FT+WD+GGQ
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKT 72
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNA 133
+R W++YF++T+ +I+VVDS D R+ E R L +L E++L +L+ ANK D+ A
Sbjct: 73 LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGA 132
Query: 134 MNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 178
+++ EI+ L + ++ +W I + A +G + + + WL+N LK
Sbjct: 133 LSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 104 bits (250), Expect = 7e-24
Identities = 51/131 (38%), Positives = 77/131 (58%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
K ++L +GLD AGKTT+L+ LK + PT+ E + N+ FT +D+GG + R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 76 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMN 135
LWR YF G++++VD D ER+ E++ EL +L+ +EL LI NK D P A++
Sbjct: 79 RLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAIS 138
Query: 136 AAEITDKLGLH 146
E+ LGL+
Sbjct: 139 EDELKAALGLY 149
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 50.8 bits (116), Expect = 1e-07
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
++L++G GK+ +L + + I TIG F + T E K + +WD GQ++
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 130
R + Y++ G+I V D D++ ++ L + + L+ NK D+
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEGVNRLLVGNKSDM 125
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 49.6 bits (113), Expect = 3e-07
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAR 104
+ R + Y++ G++ + D D++ R
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVR 101
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 44.0 bits (99), Expect = 1e-05
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73
+ +++G GK+ +L + E + + TIG T ++ K I +WD GQ++
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 130
R + Y++ G + V D + L + L E + V+++ NK DL
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVGRWL-KELREHADSNIVIMLVGNKTDL 127
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 42.7 bits (96), Expect = 3e-05
Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWD 67
F ++ +++ +G + GKT+++ + + T TIG + + +E + + +WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANK 127
GQ++ R L Y +++ I V D + E+ + + + D ++++ NK
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAERGDDVIIVLVGNK 125
Query: 128 QDL 130
DL
Sbjct: 126 TDL 128
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDEL 116
+ K I +WD GQ+K R + R+Y++ G + V D +++ E L + +
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPS 117
Query: 117 RDAVLLIFANKQDLPN 132
V+L +K DL N
Sbjct: 118 TICVVLA-GSKSDLQN 132
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 39.9 bits (89), Expect = 2e-04
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV---EYKNISFTVWDVGGQD 72
+++++G A GK++++ + + TIG F +T+ E ++ +WD GQ+
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPN 132
+ + L Y++N I V D + +A+ ++ L V+ + NK DL
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAK-SWIKELQRQAPEGIVIALAGNKLDLAQ 134
Query: 133 AMNAAEITD 141
A E D
Sbjct: 135 ERRAVEKAD 143
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 39.1 bits (87), Expect = 4e-04
Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 12/149 (8%)
Query: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF----------VVDSN 95
I T G + ET + +DVGGQ R W H F+N L+F +V+ N
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDN 278
Query: 96 DRERIGEAREELMRMLSEDELRDAVLLIFANKQDL-PNAMNAAEITDKL-GLHSLRNRNW 153
++ EA + + ++ +++F NK DL ++ + I + +
Sbjct: 279 SGNQMQEALLLWDSICNSSWFSESAMILFLNKLDLFKRKVHISPIQKHFPDYQEVGSTPT 338
Query: 154 YIQATCATSGDGLYEGLDWLSNQLKNANR 182
++Q C + + + G+ + + ++ NR
Sbjct: 339 FVQTQCPLADNAVRSGMYYFYLKFESLNR 367
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 14 GKKEMRILMVGLDAAGKTTILYKLKL 39
G ++++L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 39.1 bits (87), Expect = 4e-04
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDK 73
++++VG GKTT + + GE I T+G V + + I F VWD GQ+K
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR 97
+ L Y+ Q I + D R
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSR 94
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 38.7 bits (86), Expect = 5e-04
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER--IGEARE 105
T+G + + ++ ++DVGGQ R W + F+N +IF V ND ++ A
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAP 238
Query: 106 ELMRMLSEDELRDAVL 121
E R++ L D+++
Sbjct: 239 ERNRLVESISLFDSII 254
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 37.5 bits (83), Expect = 0.001
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 10/127 (7%)
Query: 14 GKKE--MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVW 66
GKK+ ++++++G GKT+I+ + + TIG + T V+ K ++ +W
Sbjct: 3 GKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLW 62
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDELRDAVLLI 123
D GQ++ + L +++ + V D N+ E + R+E + S ++
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFIL 122
Query: 124 FANKQDL 130
NK D+
Sbjct: 123 LGNKVDV 129
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/93 (22%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQD 72
+++ M+G + GKT+++ G + T+G N +T+ +N I+F++WD+GGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERIGEARE 105
+ + + ++F+ D + + + +E
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 36.7 bits (81), Expect = 0.002
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQDKI 74
++++VG A GKT++L LG T +PT+ N + V+ K++ +WD GQ++
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 75 RPLWRHYFQNTQGLI--FVVDSND 96
L + ++ F +DS D
Sbjct: 70 ERLRPMSYAKAHIILVGFAIDSPD 93
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 33.9 bits (74), Expect = 0.014
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF------TVWDVGGQD 72
++L++G +GK+++ + + +G ++ +E+ ++ F +WD GGQ+
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATID-IEHSHVRFLGNLVLNLWDCGGQE 62
Query: 73 KIRPLWR-----HYFQNTQGLIFVVDSNDRE 98
+ H F+N Q LI+V D RE
Sbjct: 63 AFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 33.5 bits (73), Expect = 0.019
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGGQ--- 71
++++VG A GKT +L G +PT+ N V VE ++I +WD GQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 72 DKIRPL 77
D++RPL
Sbjct: 68 DRLRPL 73
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 33.1 bits (72), Expect = 0.025
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQDKI 74
+I+++G AAGKT++L G PTI N V+ +I ++WD GQ++
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 75 RPLWRHYFQNTQGLI--FVVDSND 96
L + +T ++ F VDS D
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDSRD 98
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 32.7 bits (71), Expect = 0.033
Identities = 22/106 (20%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQD 72
++++++G GKT ++ + + TIG + T V+ K ++ +WD GQ+
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDE 115
+ + L +++ + V + N+ + + R+E + S+DE
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDE 114
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 31.1 bits (67), Expect = 0.10
Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 11/158 (6%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
KK + ++G +GKT++ +L E TT+P+I N E V +K ++ V D+ G +
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPN-EAV-WKYGAWLV-DLPGHPRA 91
Query: 75 RPLWRHYFQ---NTQGLIFVVDSNDRER-IGEAREELMRMLSEDELRDAV-LLIFANKQD 129
+ F N + ++FV++S +R + E L + + LLI NK D
Sbjct: 92 KRWITTKFSGNYNVKAVVFVLNSATIDRDVHEVGLMLFDTILKCRKHHVPHLLIACNKFD 151
Query: 130 LPNAMNAAEITD--KLGLHS-LRNRNWYIQATCATSGD 164
L A A +I K LH+ L +N +++ + D
Sbjct: 152 LFTAQPAEKIQQLLKAELHNILEEKNLQLESIVSEDVD 189
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 13 FGKKEMRILMVG-LDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
F K+ RIL VG L + + K GE+ +P +GF ++++ +N FT+++
Sbjct: 237 FLKEAYRILKVGGLLWVAEIKSRFSDKSGEVFAKELPKLGFETKSIQLQNKMFTLFE 293
>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 26.6 bits (56), Expect = 2.2
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 93 DSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQ------DLPNAMNAAEITDKLGL- 145
D ND + + R+ +++L + VL + KQ +L +A N E+ + L
Sbjct: 46 DENDSHSMATIKSHFERLKRDEQLLNGVLKKYDAKQEVLSPEELRDAQNFLEMQEANSLD 105
Query: 146 HSLRNRNWYIQATCATSGDGLYEG--LDWLSNQLKNA 180
+S+R N ++ AT D Y+ L ++N++ A
Sbjct: 106 NSIRGTNELLERAYATREDFDYQNSVLGNVTNRINGA 142
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 20 ILMVGLDAAGKTTILYKLKL 39
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 49
KE+R+++ G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 8 LFKGLFGKKEMRILMVGLDAAGKTTI 33
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 26.2 bits (55), Expect = 2.9
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 14 GKKEMRILMVGLDAAGKTTILYKLK---LGEIVTTIPTIGFNVETVEYKNISFTVWD 67
G M I M GL A+GK+TI L+ L VTT G NV ++ F+ D
Sbjct: 22 GHPGMTIWMTGLSASGKSTIACALEQYLLQRGVTTYRLDGDNVRFGLNSDLGFSEQD 78
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 3.8
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 96 DRERIGEAREELMRMLSEDELRDAVL----LIFANKQDLPNAMNAAEITDKLGLHSLRNR 151
D E+ + REE +R+L E +DA + + +DL + ++ A+++ K +S
Sbjct: 405 DEEKKKKEREEQVRLLQESADKDAEMNEASTATSENEDLKDDLSLADLSSKKTANSQATE 464
Query: 152 N 152
N
Sbjct: 465 N 465
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 5.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 2 GNMFANLFKGLFGKKEMRILMVG--LDAAGKTTI-LYKLKLGEIVTTIPTI 49
GN+FA L + ++ L G L+ + + + LKLGE + T+P I
Sbjct: 456 GNLFARLVSHVLHQRHFYPLFPGGSLEKCNPSNLDIAHLKLGEFLNTMPDI 506
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 15 KKEMRILMVGLDAAGKTTILYKL 37
KK I++VG+ +GKTT + +L
Sbjct: 6 KKPCAIIVVGMAGSGKTTFMQQL 28
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 6.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 163 GDGLYEGLDWLSNQLKNAN 181
GD E +DWL + L+++N
Sbjct: 587 GDNTSENIDWLKHSLRDSN 605
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 92 VDSNDRERIGEAREELMRMLSEDE 115
+DS++ E I +A+ E+ LSE+E
Sbjct: 430 IDSDEEETIDDAKSEMFVDLSEEE 453
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50
KK++ + ++G AGK++I+ L+ ++ P G
Sbjct: 308 KKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPG 343
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 6.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 42 IVTTIPTIGFNVETVEYKNISFTVW 66
I T P F+++ EY N+ VW
Sbjct: 237 IYFTFPVNSFSIDGCEYNNVKALVW 261
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.0 bits (52), Expect = 6.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 36 KLKLGEIVTTIPTIGFNVETVEYKN 60
+L+ + + T+ T GFN + EY N
Sbjct: 1278 RLRFNQFLGTLSTFGFNTKLSEYVN 1302
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 78 WRHYFQNTQGLIFVVDSNDRERI 100
W H++ NTQ FV D ND ++
Sbjct: 17 WTHFW-NTQESYFVYDPNDHAKV 38
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 24.6 bits (51), Expect = 8.7
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSE 113
NIS + G+ + R +W+++ + S ++ +I E + EL R E
Sbjct: 296 NISVAPIEEQGEYESRRVWKNFAVALDAGDYAAASQEKSKIEEGQRELRRQEEE 349
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.138 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 807,705
Number of Sequences: 5004
Number of extensions: 32405
Number of successful extensions: 140
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 39
length of query: 182
length of database: 2,362,478
effective HSP length: 69
effective length of query: 113
effective length of database: 2,017,202
effective search space: 227943826
effective search space used: 227943826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)
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