GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005346-TA|BGIBMGA005346-PA|IPR001128|Cytochrome P450
         (254 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    86   5e-18
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    70   4e-13
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch...    29   0.87 
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo...    28   1.5  
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    26   4.6  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    26   6.1  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   6.1  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.1  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   8.1  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 85.8 bits (203), Expect = 5e-18
 Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 8/180 (4%)

Query: 45  DDTIDAQSLLFLIAGYETSSTLLSFAIHVLATKPDLQETLRAHVQEMTKGK---EMSYEL 101
           D+ I    L FL A  + +S+ +++   +LA  PD+ + +R     + KG     +S +L
Sbjct: 306 DEEISLTFLSFLFASQDATSSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVPLSLDL 365

Query: 102 LAQMDYLEAFLQETLRIYPPVARVDRICTKPYIIPGTTVHVGVGDAVAIP-VYGLHMDED 160
           + +M Y  A ++E LR+ PPV  V     K +  P T  +    DA+ IP +YG   D  
Sbjct: 366 MEKMTYTRAVVKECLRLRPPVLMVPYRVKKAF--PITPDYTVPKDAMVIPTLYGALHDSK 423

Query: 161 IYPEAREFKPERFMDDQKKDRPSHLYLPFGAGPRNCIGLRFAM--ISAKIAMVALMKNFK 218
           +YPE   F P+R+  +   ++    ++ FG GP  C+G R+A+  + A I   ++M ++K
Sbjct: 424 VYPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYAVNHLIACIGKASIMLDWK 483


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 18/222 (8%)

Query: 43  LDDDTIDAQSLLFLIAGYETSSTLLSFAIHVLATKPDLQETLRAHVQEMT-KGKEMSYEL 101
           L +  I    +  L+AG  TS+  + + + +L +KP++ E L    + +  +  E+ ++ 
Sbjct: 273 LKEHEIAGMMIALLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVGENLELKFDQ 332

Query: 102 LAQMDYLEAFLQETLRIYPPVARVDRICTKPYIIPGTTVHVGVGDAVAIPVYGLHMDEDI 161
              M  L   +QETLR++PP+    R   +   +PG+ + +   + +         +E+ 
Sbjct: 333 YKDMPLLNYVIQETLRLHPPIHSHMRKVKRDLPVPGSKIVIPANNYLLAAPGLTATEEEY 392

Query: 162 YPEAREFKPERFMDDQKKDRPSHL---------------YLPFGAGPRNCIGLRFAMISA 206
           +  A +F P+R+ D   +D  +                 YLPFGAG   CIG +FA +  
Sbjct: 393 FTHATDFDPKRWNDRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCIGEQFAYMHL 452

Query: 207 KIAMVALMKNFKFSVCSKTMDPIDFDKRAVL-LKSAKGLWVR 247
              +   + ++ +++  K  + +D+     L L   K  W R
Sbjct: 453 STIISKFVHDYTWTLIGKVPN-VDYSSMVALPLGPVKIAWKR 493


>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 211

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 88  VQEMTKGKEMSYELLAQMDYLEAFLQETLRIYPPVARVDRICTKPYIIPGTTVHVGVGDA 147
           V+EM  G E S ++ A++D     L +  R    +  +D     P + PGT V +G   A
Sbjct: 60  VEEMAPGAETSLKI-AELDRK---LMD--RCDGGIFCLDPFRRAPDMDPGTAVELGYMAA 113

Query: 148 VAIPVYGLHMDEDIYPE-AREFKPERFMDDQK 178
              P+ G   D  +YPE  R ++ + + D  K
Sbjct: 114 QGKPLAGFTTDGRMYPEKVRSYRKQAWGDALK 145


>SPAC9E9.14 |vps24||vacuolar sorting protein
           Vps24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 48  IDAQSLLFLIAGYETSSTLLSFAIHVLATKPDLQETLRAHVQEMTKGKEMSYELLAQMDY 107
           ++ Q  +  I G   SST +   +  L   P L ET+R    E+TK   +  E+  +M  
Sbjct: 92  LNDQMAMLKIQGTMQSSTKIMQDVSSLIRLPQLSETMRNLSMELTKAGVLE-EMRDEMFL 150

Query: 108 LEAFLQETLRIYPPVARVDRICTKPYIIP 136
                +E + +      V  I TK  +IP
Sbjct: 151 PVEDDEELMDLADEDEEVQEILTKYNVIP 179


>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 87  HVQEMTKGKEMSYELLAQMDYLEAFLQETLRIYPPVARVDRICTKPYI 134
           H  ++  G    Y++L   D+L+   Q+ + I   +AR  +   KP I
Sbjct: 14  HTYQLLFGFREPYQVLVDADFLKDLSQQKIDIQAALARTVQGAIKPMI 61


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/54 (24%), Positives = 28/54 (51%)

Query: 87  HVQEMTKGKEMSYELLAQMDYLEAFLQETLRIYPPVARVDRICTKPYIIPGTTV 140
           ++++   G  M   ++ ++ YLEA L   ++    V++++RI     + PG  V
Sbjct: 258 YIKDYEGGTLMQCTMIPKIKYLEANLILAIQKAAVVSKINRITRSNVVYPGLDV 311


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 8   ERRSSESKKGDFLQILIDFAAKETAQNDTAKREILLDDDTIDAQS 52
           E+R++E+ K +   +      K+T QN   ++E + +   ID  S
Sbjct: 73  EKRAAEAAKAEVAALFNAIPKKQTPQNFLTRKEEVKESQKIDLYS 117


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 51  QSLLFLIAGYETSSTLLSFAIHVLATKPDLQETLRAHVQEMTKGKEMSYELLAQMDYLEA 110
           QSLL         +++ +F   ++  K D+ ET+ +    +   ++ S+E+L Q+  L  
Sbjct: 487 QSLLSKATSATNENSVRAFWAFMVLLKSDV-ETVDSLEMYIDSLEQYSFEVLQQLSQLNV 545

Query: 111 FLQETLRIYPPVARVDRICTKPYI 134
           F + +L       + + +C +  I
Sbjct: 546 FTKASLEDKQKKEKYNLLCVRSCI 569


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 95   KEMSYELLAQMDYLEAFLQETLRIYPPVARVDRI 128
            K M YELL  M YL   +  T+  Y  V  +DRI
Sbjct: 1260 KAMEYELLNNMQYLNFAVGCTI-AYAVVNHIDRI 1292


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,081,590
Number of Sequences: 5004
Number of extensions: 42762
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 9
length of query: 254
length of database: 2,362,478
effective HSP length: 71
effective length of query: 183
effective length of database: 2,007,194
effective search space: 367316502
effective search space used: 367316502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)