GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005345-TA|BGIBMGA005345-PA|IPR002048|Calcium-binding
EF-hand
         (268 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              32   0.005
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   1.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 32.3 bits (70), Expect = 0.005
 Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 183 SEEEITRDLLAA--FKVFDRDDNGYITRDELQ--AALEMIGEPVTDAQLNQVLALGDIDH 238
           S++  +++ L +  F  +DR++NG + R+EL+  A  E + E      L  +++  D D 
Sbjct: 228 SQDNHSKEYLVSIMFSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDTDG 287

Query: 239 DGRIDYED 246
           DG+++  +
Sbjct: 288 DGKLNVNE 295


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 126 ITIRKPLYFIEKIMPFKHFRI 146
           I +RK   F++KI PFK +++
Sbjct: 138 IILRKKREFMQKIWPFKEYQM 158


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 111 GFVSIVIMKMKFLSWITIRKPLYFIEKIMPFK 142
           G   + ++ + F S+I     L+FI KI+P +
Sbjct: 384 GIQCLTVVCLAFWSFIVSTILLWFINKIIPIR 415


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 179 SGGDSEEEITRDLLAAFKVFDR 200
           +GG  E+ +  DLL  + V +R
Sbjct: 19  NGGSHEKRLLNDLLDTYNVLER 40


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 80  QFMLRNLGIEVSDDLISDLIKDASKTGSSSN 110
           QF+  N+ +       SD I   S++GS SN
Sbjct: 658 QFLTGNMAVTEVTVRFSDTIVPRSRSGSISN 688


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.138    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,015
Number of Sequences: 429
Number of extensions: 2983
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 268
length of database: 140,377
effective HSP length: 57
effective length of query: 211
effective length of database: 115,924
effective search space: 24459964
effective search space used: 24459964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)