GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005342-TA|BGIBMGA005342-PA|IPR001578|Peptidase C12,
ubiquitin carboxyl-terminal hydrolase 1
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...   150   3e-37
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    40   5e-04
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    29   1.3  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           27   4.0  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    27   5.2  
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    27   6.9  

>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score =  150 bits (364), Expect = 3e-37
 Identities = 91/240 (37%), Positives = 139/240 (57%), Gaps = 20/240 (8%)

Query: 12  WLELESDPGLFTLLLEDFGVKGVQVEEIY--DLHKPLESP-VYGFIFLFRWIEERRSRRK 68
           W  +ESD G+FT L+E+ GVK V+V+E+Y  D+    + P +YG IFLF+W  +      
Sbjct: 3   WTTIESDAGVFTDLIENLGVKDVEVDELYSLDVDSLRQFPDIYGIIFLFKWNSK------ 56

Query: 69  FVEQIESFVRDEETINNIFFAQQMVPNSCATHALLSILLN-CPNLHLGETLSRLKHHTVG 127
            V++ +  + D ++++NIFFA+Q++ N+CAT ALLS+LLN    + LG TLS  K  +  
Sbjct: 57  -VDKPDGTM-DYDSMDNIFFAKQVINNACATQALLSVLLNHSDEIDLGTTLSEFKDFSKT 114

Query: 128 MNPENKGWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFTGEAYHFVSLVPINGHL 187
           + PE KG A+GN+  + C HNS     AR     +  V       E YHF++   IN   
Sbjct: 115 LPPELKGEALGNSEHIRCCHNSF----ARSDPFISEEVRAATDEDEVYHFIAYTNINNVF 170

Query: 188 FELDGLKPYPMDHGPWAADEDWTDKFRRVMAERLGRDAGEQVHDIRFNLMAVVPDRRLAL 247
           +ELDGL+  P++HG     E++ +K   V+  R+   A     +IRFNLM +  D++ +L
Sbjct: 171 YELDGLQAAPINHGS-CTKEEFAEKAVSVIQARI---ANYDPAEIRFNLMVICKDKKASL 226


>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 24/205 (11%)

Query: 12  WLELESDPGLFTLLLEDFGVKGVQVEEIYDLHKPLE---SPVYGFIFLFRWIEERRSRRK 68
           W  LE+ P +    L+  GV+   V +++ L +  E    PV+  +F+F       S  K
Sbjct: 2   WRPLENTPEVLEPYLQKIGVQDASVFDLFSLEEIPEYIPRPVHALLFVFP-----SSGTK 56

Query: 69  FVEQIESFVRDEETINNIFFAQQMVPNSCATHALLSILLNCP---NLHLGETLSRLKHHT 125
            + +    +  +   + + +  Q +PN+C T  LL  + N      ++  + +  L    
Sbjct: 57  TIYKGSRILPKDS--DKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTA 114

Query: 126 VGMNPENKGWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFTGEAYHFVSLVP--- 182
            G + E +   I ++ EL   H + A P    +  +   V T        HF+  V    
Sbjct: 115 EGSSIEERAKLIEDSKELEALHAAFAGPPLEVEGSEE-DVETD------LHFICFVKGKS 167

Query: 183 -INGHLFELDGLKPYPMDHGPWAAD 206
             + H +ELDG +  P+ H    +D
Sbjct: 168 KDDNHFYELDGRQEGPVQHSEIESD 192


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 312 STTALVRSNESPVLLCSEIAPEQPYKLRKLLLSHSELNALMSCIVGEVQSCQQAL 366
           ++T L+R NE    L +E+  +  ++   +LLS S+L  L + +    + CQ+A+
Sbjct: 499 NSTILLR-NEKENFLSTELQDKHVFEQENMLLSSSKLQILAALLKSFQRGCQKAV 552


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 26/122 (21%), Positives = 47/122 (38%)

Query: 15  LESDPGLFTLLLEDFGVKGVQVEEIYDLHKPLESPVYGFIFLFRWIEERRSRRKFVEQIE 74
           LE D  +   L E    K   +   +   K +   ++     F    +  S   F+E  E
Sbjct: 112 LEKDKKVIVPLAEPLSAKDTNLRASFVPPKTVTPGIFSCSNKFFLNPDGWSYDLFLEIPE 171

Query: 75  SFVRDEETINNIFFAQQMVPNSCATHALLSILLNCPNLHLGETLSRLKHHTVGMNPENKG 134
           S    ++ +N  +F ++    +C    LL  L N   L        ++   + + PE+KG
Sbjct: 172 SIFTQKDYLNGRYFRKRAFYLTCIAKHLLENLGNEVKLEFVAFNDDIRRPILAILPESKG 231

Query: 135 WA 136
           +A
Sbjct: 232 FA 233


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 269 GKHLRHLLGKGREYNVDPVEQGAVVKFVTANKDSQIIGDIYP 310
           GK      G+G +Y++D +E    V      K  Q + D++P
Sbjct: 492 GKLNNRFSGEGEDYSLDDLEYLRSVSISNPEKSVQFLRDLFP 533


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 97  CATHALLSILLNCPNLHLGETLSRLKHHTVGMNPENKGW--AIGNTPE 142
           C+T  L S+  N  ++H+  TL +L+       P N+GW  A+G  PE
Sbjct: 278 CST-LLASLYSNEFDMHILPTLLKLQETMTRDYPVNQGWKQAMGRYPE 324


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,519
Number of Sequences: 5004
Number of extensions: 84037
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 7
length of query: 441
length of database: 2,362,478
effective HSP length: 75
effective length of query: 366
effective length of database: 1,987,178
effective search space: 727307148
effective search space used: 727307148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)