GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005342-TA|BGIBMGA005342-PA|IPR001578|Peptidase C12,
ubiquitin carboxyl-terminal hydrolase 1
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136...   174   1e-43
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445...   149   4e-36
04_04_0697 + 27331643-27331693,27331798-27331917,27332007-273320...    58   1e-08
02_05_0168 + 26423464-26423790,26423828-26423941,26424366-264244...    53   5e-07
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086...    40   0.004
01_01_0449 + 3335408-3335479,3336310-3336389,3336911-3336989,333...    31   1.4  
01_06_1237 + 35630146-35630642,35632617-35632950,35633583-35633909     30   3.2  
12_02_1118 + 26210322-26212559                                         30   4.2  
02_01_0079 + 554635-556098                                             30   4.2  
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767...    29   7.4  
09_04_0105 - 14633097-14635529                                         29   9.8  
05_03_0243 + 10845284-10845676,10846722-10846889,10846946-108470...    29   9.8  

>02_05_1262 +
           35312313-35312343,35312840-35312886,35313614-35313660,
           35313740-35313842,35313924-35314691
          Length = 331

 Score =  174 bits (424), Expect = 1e-43
 Identities = 102/262 (38%), Positives = 150/262 (57%), Gaps = 22/262 (8%)

Query: 12  WLELESDPGLFTLLLEDFGVKGVQVEEIYDLHKPLES---PVYGFIFLFRWIEERRSRRK 68
           W  +ESDPG+FT L+++  VKGVQVEE+Y L     S   PVYG IFLF+W+   +  R 
Sbjct: 3   WCTIESDPGVFTELIQEMQVKGVQVEELYSLDVDSISELRPVYGLIFLFKWMAGEKDERP 62

Query: 69  FVEQIESFVRDEETINNIFFAQQMVPNSCATHALLSILLNCPNLHLGETLSRLKHHTVGM 128
            V+             N+FFA Q++PN+CAT A+LSIL+N P + +G  LS LK  T   
Sbjct: 63  VVKDPNP---------NLFFASQVIPNACATQAILSILMNRPEIDIGPELSNLKEFTGAF 113

Query: 129 NPENKGWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFTGEAYHFVSLVPINGHLF 188
            P+ KG AI N+  +  AHNS A P+     ++ A    G+   E YHF+S +P  G L+
Sbjct: 114 APDMKGLAINNSDSIRTAHNSFARPEPFVSDEQRA---AGK-DDEVYHFISYLPFEGVLY 169

Query: 189 ELDGLKPYPMDHGPWAA---DEDWTDKFRRVMAERLGRDAGEQVHDIRFNLMAVVPDRRL 245
           ELDGLK  P+  G  +    D DW    + V+ +R+ R +     +IRFNLMA++ +R+ 
Sbjct: 170 ELDGLKEGPISLGQCSGGPDDLDWLRMVQPVIQKRIERYSQS---EIRFNLMAIIKNRKD 226

Query: 246 ALTQKLGALEINQKRVKEAISK 267
             T +L  LE  + ++ + +++
Sbjct: 227 VYTAELKELEKRRDQLLQEMNE 248



 Score = 39.9 bits (89), Expect = 0.004
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 348 LNALMSCIVGEVQSCQQALNDENDKRDMYKVDDCRRTHNYDEFICTFLSMLTERGALAEL 407
           LN+ ++ +   +++  + +  E +K   ++ ++ RR HNY  F+  FL ML E+  L  L
Sbjct: 255 LNSELAEVTSAIETVSEKIIMEEEKFKKWRTENIRRKHNYIPFLFNFLKMLAEKKQLKPL 314

Query: 408 V 408
           V
Sbjct: 315 V 315


>02_01_0599 -
           4455151-4455915,4455999-4456098,4456176-4456222,
           4456566-4456612,4457299-4457461,4458013-4458042
          Length = 383

 Score =  149 bits (361), Expect = 4e-36
 Identities = 89/250 (35%), Positives = 141/250 (56%), Gaps = 25/250 (10%)

Query: 12  WLELESDPGLFTLLLEDFGVKGVQVEEIYDLHKPLES---PVYGFIFLFRWIEERRSRRK 68
           W  +E+DPG+FT LL+   +KG+QV+E+Y L     +   PVYG I L++W    +  R 
Sbjct: 57  WAAIENDPGIFTELLQQMQLKGLQVDELYSLDLDALNDLQPVYGLIVLYKWQPPEKDERP 116

Query: 69  FVEQIESFVRDEETINNIFFAQQMVPNSCATHALLSILLNCPNLHLGETLSRLKHHTVGM 128
                      ++ I N+FFA+Q++ N+CAT A++S+LLN P + L E L +LK     +
Sbjct: 117 I----------KDPIPNLFFAKQIINNACATQAIVSVLLNSPGITLSEELKKLKEFAKDL 166

Query: 129 NPENKGWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFTGEAYHFVSLVPINGHLF 188
            P+ KG AI N+  +  A NS A P+  +  ++ + V       + YHF+S VP++G L+
Sbjct: 167 PPDLKGLAIVNSESIRLASNSFARPEVPE--EQKSSVK----DDDVYHFISYVPVDGVLY 220

Query: 189 ELDGLKPYPMDHGP---WAADEDWTDKFRRVMAERLGRDAGEQVHDIRFNLMAVVPDRRL 245
           ELDGLK  P+  G       D  W    + V+ ER+ R +    ++IRF++MA++ +RR 
Sbjct: 221 ELDGLKEGPISLGKCPGGVGDIGWLRMVQPVIQERIDRFS---QNEIRFSVMAILKNRRE 277

Query: 246 ALTQKLGALE 255
             T +L  L+
Sbjct: 278 KFTLELKELQ 287


>04_04_0697 +
           27331643-27331693,27331798-27331917,27332007-27332057,
           27332682-27332787,27333218-27333276,27333372-27333446,
           27333909-27333957,27334064-27334140,27334400-27334483
          Length = 223

 Score = 58.0 bits (134), Expect = 1e-08
 Identities = 51/232 (21%), Positives = 98/232 (42%), Gaps = 20/232 (8%)

Query: 12  WLELESDPGLFTLLLEDFGVKG-VQVEEIYDLHKPLESPVYGFIFLFRWIEERRSRRKFV 70
           WL LE++P +    +   GV       ++Y L   + + V   +     +  +  +++ V
Sbjct: 5   WLPLEANPEVMNQFMRGLGVPAEAGFCDVYGLDDEMLAMVPQPVLAVILLYPQDRKKESV 64

Query: 71  EQIESFVRDEETINNIFFAQQMVPNSCATHALLSILLNCPN---LHLGETLSRLKHHTVG 127
               S V  ++   N++F +Q + N+C T  ++  + N  +   L  G    R    T  
Sbjct: 65  ASPSSTVESKKLSKNVYFTKQTIGNACGTVGIIHAIGNALSRIKLVEGSYFDRFYKQTAD 124

Query: 128 MNPENKGWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFTGEAYHFVSLVPINGHL 187
           M+P  +   +    E+     +H++  +   T+   GV          H+V    ++  +
Sbjct: 125 MDPAQRASFLEEDEEM---EKAHSVAVSAGDTEAKDGVIE--------HYVCFSCVDDEI 173

Query: 188 FELDGLKPYPMDHGPWAADEDWTDKFRRVMAERLGRDAGEQVHDIRFNLMAV 239
           FELDG    P+ HGP + D    D   +V+  R+ +  G     + FN+MA+
Sbjct: 174 FELDGGNSQPISHGPSSPDSLLQDA-AKVIKARIAQYPG----SLNFNVMAL 220


>02_05_0168 +
           26423464-26423790,26423828-26423941,26424366-26424448,
           26424756-26424804,26425789-26425894,26426460-26426518,
           26426604-26426678,26427112-26427160,26427253-26427329,
           26427662-26427744,26427852-26427867
          Length = 345

 Score = 52.8 bits (121), Expect = 5e-07
 Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 19/157 (12%)

Query: 86  IFFAQQMVPNSCATHALLSILLNCPN---LHLGETLSRLKHHTVGMNPENKGWAIGNTPE 142
           ++F +Q V N+C T  ++  + N  +   L  G    R    TV M+P  +   +    E
Sbjct: 197 VYFTKQTVGNACGTVGVIHAIGNAASKLKLVEGSYFDRFYKQTVDMDPVQRAAFLEEDDE 256

Query: 143 LACAHNSHAIPQARKKTDKNAGVSTGRFTGEAYHFVSLVPINGHLFELDGLKPYPMDHGP 202
           +    ++H++  +   TD N  V+         HFV    ++G L+ELDG K  P+ HGP
Sbjct: 257 M---EDAHSVAASAGDTDANVEVNE--------HFVCFSCVDGELYELDGRKSQPICHGP 305

Query: 203 WAADEDWTDKFRRVMAERLGRDAGEQVHDIRFNLMAV 239
            + D    D   +V+  R+  +       + FN+MA+
Sbjct: 306 SSPDTLLQDA-AKVIKARIASNP----DSMNFNVMAL 337


>04_04_1513 -
           34107700-34107765,34108475-34108551,34108640-34108688,
           34109144-34109218,34109447-34109554,34109728-34109835,
           34110708-34111256
          Length = 343

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 14/27 (51%), Positives = 21/27 (77%)

Query: 176 HFVSLVPINGHLFELDGLKPYPMDHGP 202
           H++  V  +G L+ELDG+KP P++HGP
Sbjct: 288 HYICFVECDGTLYELDGMKPGPINHGP 314


>01_01_0449 +
           3335408-3335479,3336310-3336389,3336911-3336989,
           3337342-3337423,3337820-3337976,3338660-3338717,
           3338718-3338828,3339211-3339257,3339820-3339948,
           3340750-3340834,3341264-3341344,3341881-3341886
          Length = 328

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 4/106 (3%)

Query: 70  VEQIESFVRDEETINNIFFAQQMVPNSCATHALLSILLNCPNLHLGETLSRLKHHTVGMN 129
           +E++E+ V +     N + AQQM  ++ A +      L   ++     L +LKH  V   
Sbjct: 26  IEKLENMVAE----GNYYEAQQMYKSTGARYIAAQKYLEALDILQSGALVQLKHGQVTCG 81

Query: 130 PENKGWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFTGEAY 175
            E     +    + A  +N     + RK  D    +S   F G+ Y
Sbjct: 82  GELAIMFVDTLVKAALPYNEETFDRIRKMYDAFPRISVPHFLGDDY 127


>01_06_1237 + 35630146-35630642,35632617-35632950,35633583-35633909
          Length = 385

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 8   LTEGWLELESDPGLFTLLLEDFGVKGVQV 36
           LT G L   SDPG+ T+LL D  V+G+QV
Sbjct: 224 LTLG-LSAHSDPGILTVLLADDHVRGLQV 251


>12_02_1118 + 26210322-26212559
          Length = 745

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 16/47 (34%), Positives = 19/47 (40%)

Query: 134 GWAIGNTPELACAHNSHAIPQARKKTDKNAGVSTGRFTGEAYHFVSL 180
           G A G    LAC H +  IP      + + G   GR    A H V L
Sbjct: 386 GEADGELRVLACFHTNRNIPTLLNLVESSRGTGRGRLVMYAMHLVEL 432


>02_01_0079 + 554635-556098
          Length = 487

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 30  GVKGVQVEEIYDLHK-PLESPVY--GFIFLFRWIEERRSRRKFVEQIESFVRDEETINNI 86
           GV    +EE+  LH  PL S V   G+  L+R++E+  +    + + E  +  EE INNI
Sbjct: 227 GVIPQPLEELL-LHSFPLPSFVVKPGYDLLYRFVEKHGAAAVSIAEKEHGISKEEAINNI 285

Query: 87  FF 88
            F
Sbjct: 286 LF 287


>04_03_0554 -
           17075142-17075159,17075788-17076591,17076619-17076719,
           17077095-17077751,17077827-17078768,17078837-17078896,
           17079131-17079763,17079886-17079942,17080177-17080702
          Length = 1265

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 6/99 (6%)

Query: 255 EINQKRVKEAISKIGKHLRHLLGKGREYNVDPVEQGAVVKFVTANKDSQIIGDIYPTSTT 314
           +  Q+   +    I K  +  L + +  N+ P ++ A ++ V AN+       +   + +
Sbjct: 270 QAEQEIASQDKGSIPKQEKKALARMKYRNMGPDQKKAKIEQVIANRA------LRRNTPS 323

Query: 315 ALVRSNESPVLLCSEIAPEQPYKLRKLLLSHSELNALMS 353
               + ESP  +  + +P+ P +L +  ++H E  AL+S
Sbjct: 324 KYSIAMESPTYIALDTSPQVPTRLHRKHIAHDERQALVS 362


>09_04_0105 - 14633097-14635529
          Length = 810

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 59  WIEERRSRRKFVEQIESFVRDEETINNIFFAQQMVPNSCA--THALLSILLNCPNLHLGE 116
           W    R+   +   I  FV+D+E ++ +   ++MV N  A   +   SILL C  + +  
Sbjct: 229 WRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSMVR 288

Query: 117 TLSRL 121
             S++
Sbjct: 289 EASQI 293


>05_03_0243 +
           10845284-10845676,10846722-10846889,10846946-10847044,
           10847252-10847626
          Length = 344

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 288 EQGAVVKFVTANKDSQIIGDIYPTSTTALVRSNESPVLLCSEIAPEQPYKL---RKLLLS 344
           + G + +F T  K    + +++       + S+E  V+     A +   KL   +K +L+
Sbjct: 249 KHGKMAQFKTWQKGGMTVVNVFVAGELVGIGSSEQKVIAKLNAARDATRKLAGAKKQVLT 308

Query: 345 HSELNALMSCIVGEVQSCQQALNDENDKRDMYK 377
               N L   I GE++ C+Q LN++  +++  K
Sbjct: 309 TGVGNGLGDEI-GELRECKQKLNEQCSRQNWPK 340


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.136    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,084,774
Number of Sequences: 37544
Number of extensions: 516761
Number of successful extensions: 1064
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1044
Number of HSP's gapped (non-prelim): 14
length of query: 441
length of database: 14,793,348
effective HSP length: 84
effective length of query: 357
effective length of database: 11,639,652
effective search space: 4155355764
effective search space used: 4155355764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)