GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005342-TA|BGIBMGA005342-PA|IPR001578|Peptidase C12,
ubiquitin carboxyl-terminal hydrolase 1
         (441 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   2.9  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   5.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   6.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 234 FNLMAVVPDRRLALTQKLG-ALEINQKRV 261
           FNL+A+  DR +A+TQ +  A   N +RV
Sbjct: 275 FNLVAISIDRYIAVTQPIKYAKHKNNRRV 303


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 115 GETLSRLKHHTVGMNP 130
           GET  R+K H V  NP
Sbjct: 170 GETYLRIKKHAVKFNP 185


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 300 KDSQIIGDIYPTSTTALVRSNESPVLLCSEIAPEQPYKLRKLLLSHSELNALMSCIVGEV 359
           ++ Q  GDI   S+  L    E    +C   AP+    L   +L+  +   ++  + G+ 
Sbjct: 14  EEQQPSGDILSPSSEPLDNDKEQSAQVCYRGAPQDSENLLGRVLAEFDGTTVLCRVCGDK 73

Query: 360 QS 361
            S
Sbjct: 74  AS 75


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 337  KLRKLLLSHSELNALMSCIVGEVQSCQQ 364
            K  KL++ H E   L   +  +V SCQQ
Sbjct: 1096 KYGKLVMIHEENAPLPPALPPQVVSCQQ 1123


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,097
Number of Sequences: 429
Number of extensions: 5206
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 441
length of database: 140,377
effective HSP length: 60
effective length of query: 381
effective length of database: 114,637
effective search space: 43676697
effective search space used: 43676697
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)