GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005341-TA|BGIBMGA005341-PA|undefined
         (184 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    28   0.72 
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    25   6.7  

>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 88  ISMPDEETMQQ-KPPDYDTVAGAPPTYDDAIKLNP 121
           +  PD    Q+ KP +Y T  G  P + D   LNP
Sbjct: 12  LGFPDVPISQEDKPDEYSTFLGGFPVFFDGCSLNP 46


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 68  QPQNERASTDTHQI-DDPIHVISMPDEETMQQKPPD 102
           + +NE +  +T  I ++PIH +   +EE +  K P+
Sbjct: 199 ESKNEESEHNTKSIREEPIHHVDSKNEEPVYSKIPE 234


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 710,933
Number of Sequences: 5004
Number of extensions: 26703
Number of successful extensions: 55
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 2
length of query: 184
length of database: 2,362,478
effective HSP length: 69
effective length of query: 115
effective length of database: 2,017,202
effective search space: 231978230
effective search space used: 231978230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)