GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005339-TA|BGIBMGA005339-PA|undefined
         (327 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   0.52 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.4  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   8.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 238 SHTAHSSGGSVCSSPDLDGSKLGTSPQINRFLAREP 273
           S +A S+  SVCSSP  +  ++   P + R L   P
Sbjct: 594 SSSASSAPTSVCSSPRSEDKEVEDMPVLKRVLQAPP 629


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 137  RFLRSRLQRPYKPSASGDYSVHT 159
            R+L  R+QRP K S     +  T
Sbjct: 1638 RYLGDRMQRPMKESQENQQNAET 1660


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 137  RFLRSRLQRPYKPSASGDYSVHT 159
            R+L  R+QRP K S     +  T
Sbjct: 1634 RYLGDRMQRPMKESQENQQNAET 1656


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)

Query: 242 HSSGGSVCSSPDLDGSKLGTSP 263
           H+S     SSP   GS   TSP
Sbjct: 59  HNSPSPTGSSPQHSGSSASTSP 80


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,959
Number of Sequences: 429
Number of extensions: 3741
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 327
length of database: 140,377
effective HSP length: 58
effective length of query: 269
effective length of database: 115,495
effective search space: 31068155
effective search space used: 31068155
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)