GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005338-TA|BGIBMGA005338-PA|IPR003613|U box
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...   131   3e-31
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    34   0.064
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    31   0.45 
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    30   1.4  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    29   1.8  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    29   2.4  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    29   3.2  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    28   4.2  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   7.3  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   7.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   7.3  

>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score =  131 bits (317), Expect = 3e-31
 Identities = 65/159 (40%), Positives = 100/159 (62%), Gaps = 2/159 (1%)

Query: 590 VKDMKEYEFDPASTVLDICRMYVELGNNERFCNAVSDDGRSYSPQLFTLAETVLVR--IG 647
           V+D  +Y F+  + +  I  +Y+ L N   F  AV+ DGRSYS ++F  A +++ +  + 
Sbjct: 840 VEDPTKYHFNAKTLLSIIFDVYLNLCNEPAFVEAVAHDGRSYSKEIFERATSIMTKHNLK 899

Query: 648 GGFLISTLREVAERVRLLAEQKQRDEEILANAPDEFLDPIMSTIMLDPVVLPSSRTTVDR 707
             F I  ++E   RV     Q+  +EE + + PD FLDP+M TIM DPVVLP S  ++DR
Sbjct: 900 SSFDIEAIKEFVNRVEAFRLQEATEEEDMGDIPDYFLDPLMFTIMKDPVVLPRSGISIDR 959

Query: 708 TTIARHLLSDQSDPFNRSPLSMDQVKSDTELKERIHSWI 746
           +TI  HLLSD +DPFNR+PL++D V  +  L+E I++++
Sbjct: 960 STIKAHLLSDATDPFNRTPLTLDDVTPNDTLREEINTFL 998



 Score = 94.7 bits (225), Expect = 4e-20
 Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 19/211 (9%)

Query: 364 LPVEMPITTPAPDTLRCIPEFVLENIVVLIXXXXXXXXXXXXXXDIAGLLQPALTLVLTF 423
           +P+ +P    AP+  +C+PE+ +E I   +                   L+P     ++F
Sbjct: 565 MPLSLPFNENAPEAFKCLPEYFIETITDYMLSLFKTSSSTLTLHS----LEPLCEFCVSF 620

Query: 424 MGDSSRTYNPHLRARLAECLEAMLPNHPDNQQPLSSLASFYREQLFKEHPHRSQLVPCLL 483
           +  ++   NP+LRA+LAE L   +  H    + L  +    +            L+P L+
Sbjct: 621 LTQANYIKNPYLRAKLAEILYFGVQTHVGRSELLLDVVRTSKVAT-------RWLLPALM 673

Query: 484 DVFVGIEMTGQSVQFEQKFNYRRPMYLVMEFLWGLEEHRESFSQLAREAESNMEAVHPPI 543
             ++ IE TGQS QF  KFN R  +  V   +W    +   F +L +E ++N+     P 
Sbjct: 674 AFYIEIESTGQSTQFYDKFNIRFYICEVFRTIWKQPAY---FGKLEQEQKTNL-----PF 725

Query: 544 FLRFVNLLMNDAIFLLDEALGNMAQIRTMQT 574
           F++FV L++NDA +LLDEAL  + +I  +Q+
Sbjct: 726 FVKFVALMLNDATYLLDEALLKLTEIHNLQS 756


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 34.3 bits (75), Expect = 0.064
 Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 17/156 (10%)

Query: 2   VEKRAVSKMRELIFRNAVTALKQPALFED----QDFSSQLLGL-LQH--ADPLSQSFFTD 54
           +EK  +  M    F   +T L QP +F D    +D S+ ++ L + H  A  +  S F +
Sbjct: 188 IEKLKIEDMEVEEFNYYITTLYQPRIFNDFIALRDASNYMIRLSISHAIAQSVKISLFEE 247

Query: 55  IVNALVSDCDNESQ-----AQLKATMNEVLQKINTEVKKSNLINLPNYILPSVHLFASNP 109
           +VN  +    +  Q      ++     E++  +         INL   +L S  L  + P
Sbjct: 248 LVNETIDATKDTPQMIAETGRVNLKREEIMMAVGQLFILRININLQGSVLDSPELMWTEP 307

Query: 110 HLAPILMEESEPKVENNGRL----YQDSVIGALLSL 141
            L PI    +   +E N R+     +  VIG LLS+
Sbjct: 308 QLEPI-YTAARSYLEINQRVALLNQRVEVIGDLLSM 342


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 162 AGEISAATLNCVSDGFMLNLGAVLLQLCMP-FCASPDDPKLLKIDPTYGAVPPEECASKS 220
           A E S ATL C+ D ++      + ++ +P FC +PD   + K    +G   P    SK+
Sbjct: 90  AVEPSPATLRCIQDKYLQKQHLQVFKIALPEFCDAPDQESVEKAGQEFGY--PFVLKSKT 147

Query: 221 VHLDSLHN 228
           +  D   N
Sbjct: 148 LAYDGRGN 155


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 431 YNPHLRARLAECLEAMLPNHPDNQ 454
           YNPHL A L  CL ++   +P  Q
Sbjct: 175 YNPHLNAHLVSCLASLAERYPGMQ 198


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/64 (28%), Positives = 24/64 (37%)

Query: 523 ESFSQLAREAESNMEAVHPPIFLRFVNLLMNDAIFLLDEALGNMAQIRTMQTAHSYDGGT 582
           E F Q+ R       +        F N L+N     LDE  GN + +   +  HS   GT
Sbjct: 178 ERFIQVLRRDNEAFRSTQQQDAHEFFNFLLNSVTETLDEYYGNHSDVMHPKWVHSLFEGT 237

Query: 583 ALQE 586
              E
Sbjct: 238 LTSE 241


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/70 (25%), Positives = 37/70 (52%)

Query: 675 ILANAPDEFLDPIMSTIMLDPVVLPSSRTTVDRTTIARHLLSDQSDPFNRSPLSMDQVKS 734
           +LA AP++ L+PI++  +       +    V +   A   ++DQ++    + LS+  +  
Sbjct: 62  LLAQAPEKELEPILAVFINLIQESAAFEDHVSKFCQALEQIADQNNNLTPAILSVLSILF 121

Query: 735 DTELKERIHS 744
           +T +KER H+
Sbjct: 122 NTAVKERQHA 131


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 48  SQSFFTDIVNALVS-DCDNESQAQLKATMNEVLQKINTEVKKSNLINLPNYILPSV 102
           +  +  D V  L+  D +N  +  +   MN++ +K N    K ++   PNY+ P +
Sbjct: 733 NSDYANDSVQHLLDFDINNMDETAIHMLMNQLEKKENRTFIKKDISGTPNYMAPEI 788


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 4/77 (5%)

Query: 660 ERVRLLAEQKQRDEEILANAPDEFLDPIMSTIMLDPVVLPSSRTTVDRTTIARHLLSDQS 719
           E+++  A ++  + + L N+  E L+P +S  ML+ +   + + TV+  ++     SD +
Sbjct: 392 EKLKNTASKQAIESQSLMNSGPELLEPSISDPMLEKMKTDAGKQTVESLSLKS---SDAT 448

Query: 720 DPF-NRSPLSMDQVKSD 735
            P  + S L ++++K+D
Sbjct: 449 IPKPSVSDLGVEKLKND 465


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 450 HPDNQQPLSSLASFYREQLFKEHPH--RSQLVPCLLDVFVGIEMT 492
           +PD    LSSL      Q  K HPH  R  ++   L V+  +  T
Sbjct: 99  YPDTSNALSSLRKRSNNQHMKRHPHHKRDDVIDSTLTVYETVMYT 143


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 43  HADPL------SQSFFTDIVNALVSDCDNESQAQLKATMNEVLQK 81
           H DP+      SQ  F D +  L +DCD + ++ L  T + V++K
Sbjct: 219 HIDPIAINSQDSQFIFQDRLPRLSNDCDMKGRSSLSRTSSPVVEK 263


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 589 LVKDMKEYEFDPA-STVLDICRMYVELGNNERFCNAVSDDGRSYSPQLFTLAETVLVRIG 647
           L +++   +FD     +L + ++ +E  N   F    +     Y+    TL   + V + 
Sbjct: 774 LFRNISGGKFDSLYKEILPLLQVMLECFNRLIFTVTSTSQKELYAELCLTLPIRLSVLLP 833

Query: 648 G-GFLISTLREVAERVRLLAEQKQRDEEI-LANAPDEFLDPIMSTIMLDPVV 697
              FL+  L    +    +A Q  R  E+ L N   EFLDP++ +IM D ++
Sbjct: 834 HMNFLMKPLIVALKGPPEIASQGLRIFELCLDNLTQEFLDPLLDSIMPDLLI 885


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.135    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,289,714
Number of Sequences: 5004
Number of extensions: 136214
Number of successful extensions: 414
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 14
length of query: 761
length of database: 2,362,478
effective HSP length: 78
effective length of query: 683
effective length of database: 1,972,166
effective search space: 1346989378
effective search space used: 1346989378
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)