GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005338-TA|BGIBMGA005338-PA|IPR003613|U box
         (761 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   4.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   4.0  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    24   4.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   5.3  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 56  VNALVSDCDNESQAQLKATMNEVLQKI 82
           V  LVSD D ES  Q+K+ ++ + Q +
Sbjct: 167 VQLLVSDSDVESYKQIKSDLDVLRQSV 193


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 223 LDSLHNETCLLPPREDENGQSIKRPTAETYSFVTECFFVTQKCIDLG 269
           +D+L N   ++    DE  Q   + TA+ +  + + ++   K  +LG
Sbjct: 369 IDTLENVLAIVDRLMDETNQLTLQETADAFKDLQDKYYEEYKMYELG 415


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 56  VNALVSDCDNESQAQLKATMNEVLQKI 82
           V  LVSD D ES  Q+K+ ++ + Q +
Sbjct: 135 VQLLVSDSDVESYKQIKSDLDVLRQSV 161


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 20  TALKQPALFEDQDFSSQLLGL--LQHADPLSQSFFTD-IVNALVSDCDN 65
           T + QP +      + ++L +  L+ +D  S SFF D +++   ++CDN
Sbjct: 138 TVIHQPRIIIIDLKTDKILRIYPLKSSDQTSDSFFVDLVIDVDPNNCDN 186


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,122
Number of Sequences: 429
Number of extensions: 8166
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 761
length of database: 140,377
effective HSP length: 63
effective length of query: 698
effective length of database: 113,350
effective search space: 79118300
effective search space used: 79118300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)