Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005337-TA|BGIBMGA005337-PA|IPR001660|Sterile alpha motif
SAM, IPR010993|Sterile alpha motif homology
(1009 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 36 0.021
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 36 0.028
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 32 0.46
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 32 0.46
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 32 0.46
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 31 0.81
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 31 1.1
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 30 1.4
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 30 1.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 1.4
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 2.5
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 29 3.2
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 29 3.2
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ... 29 3.2
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 4.3
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 4.3
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 29 4.3
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 29 4.3
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 28 5.7
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 28 5.7
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 28 7.5
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 27 9.9
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 9.9
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 9.9
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 9.9
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 27 9.9
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 36.3 bits (80), Expect = 0.021
Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 4/180 (2%)
Query: 135 AEIGNGSNSNERNILDPADSSEEEVPLPDATSPGRSSDGPEPRADITATLEEAASPGARS 194
++I N S NERN+L ++ L +S G D + + T LE+
Sbjct: 599 SKIKNESLLNERNLLKEMLATSRSSILSHNSSAGNIDDKMKSIDESTRELEKNYEVYRNE 658
Query: 195 DRSRQEEIPASPGMLTGAQLARRLRMENERLQAELTXXXXXXXXXXXXXXXXNALLERTK 254
+ QE + L A R +EN + Q +L+ A R+
Sbjct: 659 MTAIQESLSKRNQDLLSEMEAIRKELENSKYQQQLSTDRLTNANNDVEAFKKEAKELRSI 718
Query: 255 DDESQETIALDPQQLEK---ELLLAREAVNSLKADKKRLKAEKFDLLNQMKQLYATLEDK 311
+ Q+ I+ Q+ K ELL LK + K EK DL + ++ + DK
Sbjct: 719 NQNLQDIISRQDQRASKFAEELLHVNSLAERLKGELNASKGEK-DLRKRTQERLISENDK 777
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 35.9 bits (79), Expect = 0.028
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 69 TLDKPRNGSL--NADKDAGTLNRTTRLAIRNGKDNPFIDDDNKENQANGKLDSPVKWSTQ 126
++DK N + A++DA ++ + A NG D D + + N K SPV +
Sbjct: 8 SIDKDANSTEVDAAEQDAASVKINSTRASPNGSDLLNDDSEAAKITTNEKQSSPV--DSH 65
Query: 127 NGSDSGTYAEIGNGSNSNERNILDPADSSEEE--VPLPDATSPGRSSDGPEPRADITATL 184
N S + T G N NE + ++ D E+E V + + + + D
Sbjct: 66 NESPNDTTINKGEDGNENEVDNVNNNDKKEDEDNVEENEEEADANEEEEEDEEDDEEDEE 125
Query: 185 EEAASPGARSDRSRQE 200
+E S G R R+R +
Sbjct: 126 DEDESGGGRRKRARHD 141
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 697 AEWLPDLGLSQYAESFLANLVDARMLDTISKKELEKYLGV 736
AEWL +GL +Y E F N ++ R L+ ++ L K LG+
Sbjct: 10 AEWLKSIGLEKYIEQFSQNNIEGRHLNHLT-LPLLKDLGI 48
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 31.9 bits (69), Expect = 0.46
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Query: 104 IDDDNKENQANGKLDSPVKWSTQNGSDSGTYAEIGNGSNSNERNILDPADSSEEEVPLPD 163
+DD +N+A +L SPV+ SD A + NGSN N LD DS EE+ + +
Sbjct: 294 VDDGFIDNRATSQL-SPVE------SDDDFVAPV-NGSNGNGITALDSTDS--EEIDIMN 343
Query: 164 ATSPGRSSDGPEPRADITATLEEAASPGARSDRSRQE 200
R S G ++ + E + G R D R+E
Sbjct: 344 GFDEERDSGG----TNMVSRSETCYNDGQRYDELRRE 376
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 31.9 bits (69), Expect = 0.46
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 99 KDNPFIDDDNKENQANGKLDSPVKWSTQNGSDSGTYAEIGNGSNSNERNILDPADSSEEE 158
K++PF D N + + K+ P K + QN D + + +N NI+ D +
Sbjct: 558 KEHPFFADINWDLLSKKKVQPPFKPNVQNDLDVSNFDKEFTNTNVKNINIVSNVDPANAS 617
Query: 159 VPL 161
PL
Sbjct: 618 TPL 620
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 31.1 bits (67), Expect = 0.81
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 219 RMENERLQAELTXXXXXXXXXXXXXXXXNALLER--TKDDESQETIALDPQQLEKELLLA 276
+ +NE LQ E + +E ++ +E +E ++L+ EK+LL
Sbjct: 900 KQQNENLQRESASLKQINNELESELLEKTSKVETLLSEQNELKEKLSLE----EKDLLDT 955
Query: 277 REAVNSLKADKKRLKAEKFDLLNQMKQLYATLEDKEKEL 315
+ + SL+ + + +EK + Q K L T+ K+ EL
Sbjct: 956 KGELESLRENNATVLSEKAEFNEQCKSLQETIVTKDAEL 994
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 269 LEKELLLAREAVN---SLKADKKRLKAEKFDLLNQMKQLYATLEDKEKELRDFIR 320
L K L++ RE N L+ADKK+LK + DL+ + + + DK +ELR ++
Sbjct: 228 LAKMLVIYREKTNVFNQLRADKKKLKKDLKDLVEEFQPIL----DKGEELRSDLK 278
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 270 EKELLLAREAVNSLKADKKRLKAEKFDLLNQMKQLYA----------TLEDKEKELRDFI 319
E++L +A+ ++N ++ + LK E L +Q+K L T+++ EK LR+
Sbjct: 307 EEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMN 366
Query: 320 RNYE 323
NYE
Sbjct: 367 ANYE 370
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 110 ENQANGKLDSPVKWSTQNGSDSGTYAEIGNGSNSN---ERNILDPADSSEEEVPLPDATS 166
EN+ +D+ +++ SGT E + NSN E N L+P +E + P +
Sbjct: 184 ENETETNVDNGDTKISESNEKSGTEVEQQSAPNSNGNEEVNNLEPVGQNESKQEPPKEEN 243
Query: 167 PGRSSDGPE-PRADITATLEEAAS 189
S + PE + +++A E+ S
Sbjct: 244 SNVSQEQPEQAQPEVSAASEQPES 267
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/71 (23%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 254 KDDESQETIALDPQQLEKELLLAREAVNSLKADKKRLKAEKFDLLNQMKQLYATLEDKE- 312
++ S +++ + ++LEK L+ + + V++L+ + L+AE L ++++ ED +
Sbjct: 240 EEQASNKSLRGEQERLEKLLVSSNKTVSTLRQTENSLRAECKTLQEKLEKCAINEEDSKL 299
Query: 313 -KELRDFIRNY 322
+EL+ + NY
Sbjct: 300 LEELKHNVANY 310
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/76 (22%), Positives = 37/76 (48%)
Query: 249 LLERTKDDESQETIALDPQQLEKELLLAREAVNSLKADKKRLKAEKFDLLNQMKQLYATL 308
L RT+ ++ QL+ E+ ++ V+ +A++KRL + + QMK+ L
Sbjct: 431 LQSRTQMQTELDSYITSNSQLKDEITSLKQTVSESEAERKRLFSSAQEKQLQMKETVNKL 490
Query: 309 EDKEKELRDFIRNYEQ 324
+++ +F R ++
Sbjct: 491 TSLQEQNNEFDRQLKE 506
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 42 ITPA-SSVLDRSDLDHRPIPPERRLLIGTLDKPRNGSLNADKDAGTLNRTTRLAIRNGKD 100
ITP SS ++ L + P PP++ ++G+L P + + + + A NR G
Sbjct: 247 ITPTKSSGVNLMPLSNAPSPPKQMNVVGSL--PSSSNTSPNHLASVPNRGLTSNSSTGSF 304
Query: 101 NPFIDDDNKENQANGKLDSPVKWSTQNGSDS 131
+ + + +N + +P S N S S
Sbjct: 305 TKYTNGSSNSLYSNSSMQTPYLPSKSNSSTS 335
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/66 (25%), Positives = 37/66 (56%)
Query: 259 QETIALDPQQLEKELLLAREAVNSLKADKKRLKAEKFDLLNQMKQLYATLEDKEKELRDF 318
+++I + ++ L +E N +KKR++AE+ L ++ ++ L +KEK+ ++
Sbjct: 92 EQSITESQRIFSEKQRLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEKEKKEKER 151
Query: 319 IRNYEQ 324
IR E+
Sbjct: 152 IRLIEE 157
>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 200
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 252 RTKDDESQETIALDPQQLEKELLLAREAVNSLK---ADKKRLKAEKFDLLNQMKQLYATL 308
R DD++ E I +QL +LL+ REA K + AE L+ + L
Sbjct: 31 RDADDQNPEQIK---RQLMSKLLILREANRKSYEQLVQAKTITAEHKSELDNARIRLQAL 87
Query: 309 EDKEKELRDFIRNYEQ 324
+ K+ L+ I+NYE+
Sbjct: 88 QYKKLHLKTIIKNYEE 103
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.7 bits (61), Expect = 4.3
Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 90 TTRLAIRNGKDNPFIDDDNKENQANGKLDSPVK--WSTQNGSDSGTYAEIGNGSNSNERN 147
TT ++ K ++ N ++Q K +P + S+ S SG+ ++ + S+S +
Sbjct: 62 TTEDVGKHKKTKESLEKSNDDSQKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESES 121
Query: 148 ILDPADSSEEEVPLPDATSPGRSSDGPEPRADITATLEEAASPGARSDRSRQEE 201
+ DSS ++ S SD +D + S + S S + E
Sbjct: 122 SSEDNDSSSSSSD-SESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESE 174
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 4.3
Identities = 34/152 (22%), Positives = 48/152 (31%), Gaps = 12/152 (7%)
Query: 436 GGATSVCGGNLSDS---TAEGLPPTIDSYDTDGASLVSSAHHIYQLGTPRDCSPTVSPHN 492
G + +CGG+L S T G+ T T +S VSS +P S T +
Sbjct: 101 GYGSLMCGGDLYWSVYLTGNGVLQT-----TVSSSSVSSTTSSSSSSSPSSSSTTTTT-- 153
Query: 493 SGSPFTRSIDAGSLSRSVEQLSSPGECEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 552
SP + S + S S S SS
Sbjct: 154 --SPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPIT 211
Query: 553 VFARSRHRTKSGSAAVSGHESEPVYAGTGSTT 584
S H + S S++ S S P + + TT
Sbjct: 212 SSTSSSHSSSSSSSSSSSSSSRPSSSSSFITT 243
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 135 AEIGNGSNSNERNILDPADSSEEEVPLPDATSPGRSSDGPEPRADITATLEEAASPGARS 194
AE+ G+ S + ++ ++S ++ PE A+ +++ ++ G RS
Sbjct: 292 AEVAQGAASAKAPQQTTQQGTQNSANAEPSSSASVPAEAPETEAE--QSIDVSSDIGLRS 349
Query: 195 DRSRQEEIPASPGMLTGAQLARRLRMEN 222
D S+ E P S + Q + EN
Sbjct: 350 DSSKPNEAPTSSENIKADQPENSTKQEN 377
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 248 ALLERTKDDESQETIALDPQQLEKELLLAREAVNSLKADKKRLKAEKFDLLNQMKQLYAT 307
AL+ + ++ +Q+ L QQ + RE + LK+ L AE+ LL + KQL +
Sbjct: 1013 ALMRQLEEAVTQKNYLLS-QQSHDDRESFRERMQILKSKYGALNAERAGLLGECKQLENS 1071
Query: 308 LEDKEKEL 315
+ ++EL
Sbjct: 1072 ITKDKEEL 1079
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 249 LLERTKDDESQETIALDPQQLEKELLLAREAVNSLKADKKRLKAEKFDL 297
+L++T++ E E D Q+ +KE A+ +V +L D + ++A+KF+L
Sbjct: 149 VLQQTEEGEDAENDDEDLQK-KKERKRAQRSVKTLVKDFESIRAKKFEL 196
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 28.3 bits (60), Expect = 5.7
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 116 KLDSPVKWSTQNGSDSGTYA-----EIGNGSNSNERNILDPADSSEEEVPLPDATSPGRS 170
+L SP W Q + SG + E+ +G N+N ++P D + E+ L + PG
Sbjct: 333 RLTSPEIWELQQLAASGAISATDIPELNDGFNTNNAAEINPEDDEDVEIELRE-EEPGFL 391
Query: 171 SDGPEPRADITATLEEAASPGARSDRSRQEEIPASPGMLTGAQLARRLRMENERLQAELT 230
+ + ++ A G+ S + Q +I A+ Q +L+ E E + +L+
Sbjct: 392 AGQTKVSLKLSPIKVVKAPDGSLSRAAMQGQILANDRREI-RQKEAKLKSEQEMEKQDLS 450
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 260 ETIALDPQQLEKELLLAREAVNSLKADKKRLKAEKFDLLNQMKQLYATLEDKEKELRDFI 319
+T+ L + E LL + V S + K+ + ++ L + KQ + L + E ELR+F+
Sbjct: 707 DTVKLHSLESEISLLKDKYTVVSRSVEDKKKEIGHYESLIKEKQPH--LSELEMELRNFV 764
Query: 320 RNYEQM 325
++ +++
Sbjct: 765 KSRDEL 770
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 910 LSQLSMQYAPPPTLQEYEPIYTPLSLYSQSSVSTRDSLQRLNEIKENSNIMHRYGQRADQ 969
+S+ S + + P + E E + + YS SVS + + KE+SN ++ + Q
Sbjct: 239 ISEASSEASLP--IDEVESMDEDVDGYSDHSVSVAAPIPKKESRKESSNSLYESYRLGSQ 296
Query: 970 AHRVSSPLPSKSVDDSLVKQKRH 992
++SP PS S S K ++
Sbjct: 297 ---IASPSPSVSGSASPTKSNKN 316
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 249 LLERTKDDESQETIALDPQQLEKELLLAREAVNSLKADKKRLKAEKFDLLN-QMKQLYAT 307
LLE+ K E++ + K+++ +E+ D K L E+ + LN Q+ QL
Sbjct: 650 LLEQLKMTEAEVDSLRKENEENKQVIALKESELVKSNDNKLLLNEQIESLNDQLSQLKTE 709
Query: 308 LED---KEKELRDFIRNYEQ 324
+E ++ L D++ N ++
Sbjct: 710 MESVTTSKESLADYLSNLKE 729
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.5 bits (58), Expect = 9.9
Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 1/129 (0%)
Query: 74 RNGSLNADKDAGTLNRTTRLAIRNGKDNPFIDDDNKENQANGKLDSPVKWSTQNGSDSGT 133
+NG++N + N T R+ + N +DNK ++ D + S+S
Sbjct: 1475 QNGNVNRNPRVSNNNSTNVSRERSSEANHRTSNDNKRDEVTEGKDKNKRQDISGESNSRQ 1534
Query: 134 YAEIGNGSNSNERNI-LDPADSSEEEVPLPDATSPGRSSDGPEPRADITATLEEAASPGA 192
I SN N D D+ + RSSD P E + A
Sbjct: 1535 NNAISRAGRSNGSNRGNDSRDADGRRSTHYASNKRPRSSDSQSPSNLREEDERENSRRRA 1594
Query: 193 RSDRSRQEE 201
R D R +
Sbjct: 1595 RQDDRRDRD 1603
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.5 bits (58), Expect = 9.9
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 11/130 (8%)
Query: 72 KPRNGSLNADKDAGTLNRTTRLAIRNGKDNPFIDDDNKENQANGKLDSPVKWSTQNGSDS 131
K RNG N D + +N + + K+ I+D+ K + G + SPV + D
Sbjct: 1398 KARNGR-NNDDSSNKINLSEK-----EKEKESIEDEEKNRE--GSM-SPVAKHASDVEDD 1448
Query: 132 GTYAEIGNGSNSNERNILDPADSSEEEVPLPDATSPGRSSDGPEPRADITATLEEAASPG 191
A+ + + E + P SSE++ P P TS ++++ D +++
Sbjct: 1449 HDVAK--STAPDFETSSHRPERSSEKKSPSPVFTSVKQTAENDADNEDDKTDMDDQTEET 1506
Query: 192 ARSDRSRQEE 201
+D + +EE
Sbjct: 1507 LDADNTMEEE 1516
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 265 DPQQLEKELLLAREAVNSLKADKKRLKAE-----KFDLLNQMKQLYATLEDKEKELRDFI 319
DP + E++ +LK +KK A KF+ +NQ+K+ +L ++ R+ +
Sbjct: 441 DPSTISVRTKFMVESITNLKENKKTKVANASAQSKFEAVNQLKKFLGSLGNRSLNAREPL 500
Query: 320 R 320
R
Sbjct: 501 R 501
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.130 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,751,549
Number of Sequences: 5004
Number of extensions: 147672
Number of successful extensions: 436
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 48
length of query: 1009
length of database: 2,362,478
effective HSP length: 80
effective length of query: 929
effective length of database: 1,962,158
effective search space: 1822844782
effective search space used: 1822844782
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)
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