GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005337-TA|BGIBMGA005337-PA|IPR001660|Sterile alpha motif
SAM, IPR010993|Sterile alpha motif homology
         (1009 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    35   0.003
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    34   0.005
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    27   0.58 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    24   7.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    24   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   9.4  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 35.1 bits (77), Expect = 0.003
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 79  NADKDAGTLNRTTRLAIRNGKDNPFIDDDNKENQANGKLDSPVKWSTQNGSDSGTYAEIG 138
           NA+K  G  NR       + K N    +DNK+N  N + D+    + QNG+      + G
Sbjct: 451 NANKQNG--NRQNDNRQNDNKQNGNRQNDNKQN-GNRQNDNKQNGNRQNGNKQNDNKQNG 507

Query: 139 NGSNSNERN 147
           N  N N+RN
Sbjct: 508 NRQNDNKRN 516



 Score = 29.5 bits (63), Expect = 0.14
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 81  DKDAGTLNRTTRLAIRNGKDNPFIDDDNKENQ-ANGKLDSPVKWSTQNGSDSGTYAEIGN 139
           +++AG  N   + A     +N   D+ N   Q  N + D+    + QNG+      + GN
Sbjct: 424 NQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGN 483

Query: 140 GSNSNERN 147
             N N++N
Sbjct: 484 RQNDNKQN 491


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 34.3 bits (75), Expect = 0.005
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 685 PTIGQLSHAWVAAEWLPDLGLSQYAESF-LANLVDARMLDTISKKELEKYLGVTRKFHQA 743
           P    L+     +EWL  + +S+YAESF  + +        ++ +EL   LGVT   HQ 
Sbjct: 916 PDAVDLTQLTSVSEWLASIKMSRYAESFERSGVTTLEAAARVTVQELTA-LGVTLVGHQK 974

Query: 744 SIVHGIHLLR 753
            I++ +  LR
Sbjct: 975 KIMNSVTALR 984


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 27.5 bits (58), Expect = 0.58
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query: 62  ERRLLIGTLDKPRNGSLNADKDAGTLNRTTRLAIRNGKDNPFIDDDNKENQANGKLDSPV 121
           ER + I  LD     S   +++A  L  T +++ R GK  P      +    + KLD   
Sbjct: 75  ERNITI-KLDTRAEDSTRGEQEAN-LGYTNKMSTR-GK-RPASPGYVQPPTKHQKLDQKF 130

Query: 122 KWSTQNGSDSGTYAEIGNGSNSNERNILDPADSSEEE 158
            +  +N  +   +    NGSNS+  ++L   +  EE+
Sbjct: 131 IFPQENNYNDNYFYSKSNGSNSSNSDVLFKQNKEEEQ 167


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 106 DDNKENQANGKLDSPVKWSTQNGSDSGTYAEIGNGSNSNERNILDPADSSEEEVPLP 162
           + +KE +    L +  K+S  N  ++       N  N+N + +      + E++P+P
Sbjct: 74  ETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPVP 130


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 106 DDNKENQANGKLDSPVKWSTQNGSDSGTYAEIGNGSNSNERNILDPADSSEEEVPLP 162
           + +KE +    L +  K+S  N  ++       N  N+N + +      + E++P+P
Sbjct: 74  ETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPVP 130


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 112 QANGKLDSPVKWSTQNGSDSGTYAEI 137
           QA G     + W    GS SG Y E+
Sbjct: 732 QAQGVPTPTIVWKKATGSKSGEYEEL 757


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 112 QANGKLDSPVKWSTQNGSDSGTYAEI 137
           QA G     + W    GS SG Y E+
Sbjct: 728 QAQGVPTPTIVWKKATGSKSGEYEEL 753


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.130    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,038
Number of Sequences: 429
Number of extensions: 9101
Number of successful extensions: 29
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 10
length of query: 1009
length of database: 140,377
effective HSP length: 65
effective length of query: 944
effective length of database: 112,492
effective search space: 106192448
effective search space used: 106192448
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 48 (23.4 bits)