GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005336-TA|BGIBMGA005336-PA|IPR011009|Protein
kinase-like, IPR004119|Protein of unknown function DUF227
         (411 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    26   0.67 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    26   0.67 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   2.1  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   8.3  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.8 bits (54), Expect = 0.67
 Identities = 13/21 (61%), Positives = 17/21 (80%)

Query: 344 LIEALISMLIITSPTEKALQL 364
           LIEAL ++L  T PT+KAL+L
Sbjct: 171 LIEALDAILPPTRPTDKALRL 191


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.67
 Identities = 13/21 (61%), Positives = 17/21 (80%)

Query: 344 LIEALISMLIITSPTEKALQL 364
           LIEAL ++L  T PT+KAL+L
Sbjct: 228 LIEALDAILPPTRPTDKALRL 248


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 12/21 (57%), Positives = 17/21 (80%)

Query: 344 LIEALISMLIITSPTEKALQL 364
           LIEAL ++L  + PT+KAL+L
Sbjct: 228 LIEALDAILPPSRPTDKALRL 248


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 344 LIEALISMLIITSPTEKA 361
           LIEAL ++L  T PT+KA
Sbjct: 155 LIEALDAILPPTRPTDKA 172


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,109
Number of Sequences: 429
Number of extensions: 5878
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 411
length of database: 140,377
effective HSP length: 59
effective length of query: 352
effective length of database: 115,066
effective search space: 40503232
effective search space used: 40503232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)