GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005334-TA|BGIBMGA005334-PA|undefined
         (181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          25   6.6  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    25   6.6  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.6  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    25   8.7  

>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 4   LEQKPGPSSVKINIADVDSIHVEPYAVDIIA-YAFFFVGLH 43
           L+  P   S+ I IAD+   HV  +  + +A ++FF++ L+
Sbjct: 282 LQNDPTTLSISIPIADLSYKHVVEWVTNGVAIFSFFYLLLY 322


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 139 LLCTSVAVESGFGLYPAKCQPIPGYG 164
           LLC ++AV S   +Y A   PIP  G
Sbjct: 34  LLCRALAVRSEKSVYEASRNPIPRPG 59


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 57  DPDIREPSIRYTYWYQRLDNICNEAVLQCGLSCIAYVAMELRLVSFK 103
           DP ++ P I YTY  +RL   C   V+   L    YV     L+ F+
Sbjct: 79  DPVLKFPGIHYTYSRERLWGTC---VILSTLFWSYYVLSNSELLEFE 122


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 50  MMLVDGCDPDIREPSIRYTYWYQRLDNICNEAVLQC 85
           M+ +   DP++ E  I+Y   +QR  N  +  VL+C
Sbjct: 74  MLFISNIDPEVSENDIKYL--FQRY-NFISARVLRC 106


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.141    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 883,045
Number of Sequences: 5004
Number of extensions: 36079
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 4
length of query: 181
length of database: 2,362,478
effective HSP length: 69
effective length of query: 112
effective length of database: 2,017,202
effective search space: 225926624
effective search space used: 225926624
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)