GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005334-TA|BGIBMGA005334-PA|undefined
         (181 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY358654-1|AAQ89017.1|  772|Homo sapiens CDH19 protein.                33   0.57 
AJ007607-1|CAC13126.1|  772|Homo sapiens cadherin-19 protein.          33   0.57 
BC015877-1|AAH15877.1|  390|Homo sapiens CDH19 protein protein.        33   0.75 
DQ003059-1|AAY21808.1|  515|Homo sapiens NHE domain-containing 1...    29   9.3  
BC132712-1|AAI32713.1|  515|Homo sapiens Na-H-exchanger protein ...    29   9.3  
BC110794-1|AAI10795.1|  515|Homo sapiens Na-H-exchanger protein ...    29   9.3  

>AY358654-1|AAQ89017.1|  772|Homo sapiens CDH19 protein.
          Length = 772

 Score = 33.1 bits (72), Expect = 0.57
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 7/111 (6%)

Query: 1   MTKLEQKPGPSSVKINIADVDSIHVEPYAVDIIAYAFFFVGLHKERGSQMMLVDGCDPDI 60
           + K   +   + +KI + DVD    EP  + ++ Y  F V     +GS + +V   DPD 
Sbjct: 345 LMKYHTEASTTFIKIQVEDVD----EP-PLFLLPYYVFEVFEETPQGSFVGVVSATDPDN 399

Query: 61  REPSIRYTYWYQRLDNICNEAVLQCGLSCIAYVA--MELRLVSFKVYNNEK 109
           R+  IRY+    ++ NI +   +    S    ++    L + + + YN E+
Sbjct: 400 RKSPIRYSITRSKVFNINDNGTITTSNSLDREISAWYNLSITATEKYNIEQ 450


>AJ007607-1|CAC13126.1|  772|Homo sapiens cadherin-19 protein.
          Length = 772

 Score = 33.1 bits (72), Expect = 0.57
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 7/111 (6%)

Query: 1   MTKLEQKPGPSSVKINIADVDSIHVEPYAVDIIAYAFFFVGLHKERGSQMMLVDGCDPDI 60
           + K   +   + +KI + DVD    EP  + ++ Y  F V     +GS + +V   DPD 
Sbjct: 345 LMKYHTEASTTFIKIQVEDVD----EP-PLFLLPYYVFEVFEETPQGSFVGVVSATDPDN 399

Query: 61  REPSIRYTYWYQRLDNICNEAVLQCGLSCIAYVA--MELRLVSFKVYNNEK 109
           R+  IRY+    ++ NI +   +    S    ++    L + + + YN E+
Sbjct: 400 RKSPIRYSITRSKVFNINDNGTITTSNSLDREISAWYNLSITATEKYNIEQ 450


>BC015877-1|AAH15877.1|  390|Homo sapiens CDH19 protein protein.
          Length = 390

 Score = 32.7 bits (71), Expect = 0.75
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 1   MTKLEQKPGPSSVKINIADVDSIHVEPYAVDIIAYAFFFVGLHKERGSQMMLVDGCDPDI 60
           + K   +   + +KI + DVD    EP  + ++ Y  F V     +GS + +V   DPD 
Sbjct: 290 LMKYHTEASTTFIKIQVEDVD----EP-PLFLLPYYVFEVFEETPQGSFVGVVSATDPDN 344

Query: 61  REPSIRYTYWYQRLDNI 77
           R+  IRY+    ++ NI
Sbjct: 345 RKSPIRYSITRSKVFNI 361


>DQ003059-1|AAY21808.1|  515|Homo sapiens NHE domain-containing 1
           protein protein.
          Length = 515

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 15  INIADVDSIHVEPYAVDIIAYAFFFVGLHKERGSQMMLVDG 55
           +  A V + H+EPYA D++  AF  + +    G+ +M + G
Sbjct: 452 LETARVSAPHLEPYAKDVMTVAFLAILITAPNGALLMGILG 492


>BC132712-1|AAI32713.1|  515|Homo sapiens Na-H-exchanger protein
           protein.
          Length = 515

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 15  INIADVDSIHVEPYAVDIIAYAFFFVGLHKERGSQMMLVDG 55
           +  A V + H+EPYA D++  AF  + +    G+ +M + G
Sbjct: 452 LETARVSAPHLEPYAKDVMTVAFLAILITAPNGALLMGILG 492


>BC110794-1|AAI10795.1|  515|Homo sapiens Na-H-exchanger protein
           protein.
          Length = 515

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 15  INIADVDSIHVEPYAVDIIAYAFFFVGLHKERGSQMMLVDG 55
           +  A V + H+EPYA D++  AF  + +    G+ +M + G
Sbjct: 452 LETARVSAPHLEPYAKDVMTVAFLAILITAPNGALLMGILG 492


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.323    0.141    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,347,376
Number of Sequences: 224733
Number of extensions: 1116063
Number of successful extensions: 2110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2107
Number of HSP's gapped (non-prelim): 6
length of query: 181
length of database: 73,234,838
effective HSP length: 85
effective length of query: 96
effective length of database: 54,132,533
effective search space: 5196723168
effective search space used: 5196723168
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)