GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005332-TA|BGIBMGA005332-PA|undefined
         (65 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   0.31 
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   0.54 
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   0.94 
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    24   2.2  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    24   2.9  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    23   6.6  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    22   8.7  
SPAC1783.06c |atg12|apg12|autophagy associated protein Atg12|Sch...    22   8.7  

>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.1 bits (57), Expect = 0.31
 Identities = 10/13 (76%), Positives = 11/13 (84%)

Query: 49  KKNEVNFDKIFNQ 61
           KKN VNFD +FNQ
Sbjct: 123 KKNPVNFDSVFNQ 135


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 26.2 bits (55), Expect = 0.54
 Identities = 9/24 (37%), Positives = 18/24 (75%)

Query: 17   MEKSKCTPAARASKKIVLPDPSVR 40
            ME+S  TP+ + +K++++ D S+R
Sbjct: 1140 MEESLTTPSGKVNKEVIVDDTSLR 1163


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 0.94
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query: 30  KKIVLPDPSVRSVMHKYMEKKNEVNFDKIF 59
           +K++L  P+V S +    ++  E +FD++F
Sbjct: 514 QKLILKGPNVESSLGHTYDRNYEFSFDRVF 543


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 24  PAARASKK--IVLPDPSVRSVMHKYMEKK 50
           P  R SK   +VLP+ ++R + + Y +KK
Sbjct: 374 PKRRYSKSSTLVLPETNIRKLANSYSQKK 402


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 14/63 (22%), Positives = 25/63 (39%)

Query: 3   DLEAVLADVSYLMAMEKSKCTPAARASKKIVLPDPSVRSVMHKYMEKKNEVNFDKIFNQV 62
           D++  L D   L A   S         +K  +   S    + +Y  +     FD++F+Q 
Sbjct: 155 DIQRHLTDTRLLFASMHSDIYNIGSVQEKCTVKHRSQIENLDEYKSQAKSYYFDRLFDQN 214

Query: 63  LGK 65
           + K
Sbjct: 215 INK 217


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 32  IVLPDPSVRSVMHKYMEKKN 51
           +V+ + S+ SV+ KY +KKN
Sbjct: 332 LVIDNISILSVVTKYKDKKN 351


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 3   DLEAVLADVSYLMAMEKSKCTPAARASKKIVLPDPSVRSVMH 44
           D+E   A V   + M     TP A  S  ++L DP     +H
Sbjct: 784 DMEVPSATVIISIKMAHLLVTPKAPYSFSVLLQDPESEFCVH 825


>SPAC1783.06c |atg12|apg12|autophagy associated protein
          Atg12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 17 MEKSKCTPAARASKKIVLPDPSVRSVMHKYMEKKN 51
          +EK   T     ++ I    PS+ ++++ Y EK+N
Sbjct: 10 LEKRLATEEDSQNEDIENQLPSIETIINTYREKEN 44


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.128    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,112
Number of Sequences: 5004
Number of extensions: 7683
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 8
length of query: 65
length of database: 2,362,478
effective HSP length: 45
effective length of query: 20
effective length of database: 2,137,298
effective search space: 42745960
effective search space used: 42745960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)