GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005332-TA|BGIBMGA005332-PA|undefined
         (65 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    19   4.9  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    19   6.4  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    19   6.4  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              18   8.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    18   8.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    18   8.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    18   8.5  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 19.0 bits (37), Expect = 4.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)

Query: 51  NEVNFDKIFNQVLG 64
           N+ NFD++  ++LG
Sbjct: 392 NDFNFDEVNFRILG 405


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 18.6 bits (36), Expect = 6.4
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 33  VLPDP---SVRSVMHKYMEKKNEVNFDKIFN 60
           +LPD      +SVM K +      N +KI+N
Sbjct: 98  LLPDQLQERAQSVMGKCLPTSGSDNCNKIYN 128


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 18.6 bits (36), Expect = 6.4
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 33  VLPDP---SVRSVMHKYMEKKNEVNFDKIFN 60
           +LPD      +SVM K +      N +KI+N
Sbjct: 98  LLPDQLQERAQSVMGKCLPTSGSDNCNKIYN 128


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 18.2 bits (35), Expect = 8.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 36 DPSVRSVMHKYMEKKNEVNFDKIFNQ 61
          D +V+S +   M+K N V+ +  FN+
Sbjct: 56 DENVQSYVECMMKKFNVVDENGNFNE 81


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 18.2 bits (35), Expect = 8.5
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 16  AMEKSKCTPAARASKKIVLPDPSVRSVMHKYMEKKNEVNFDKI 58
           A+ +S C     AS  + +    +   ++ ++  KN+ NF  I
Sbjct: 73  AIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNI 115


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.2 bits (35), Expect = 8.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 24  PAARASKKIVLPDPSVRSV 42
           PA R + +++   P+ RSV
Sbjct: 974 PATRYTIRVIAEGPAGRSV 992


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.2 bits (35), Expect = 8.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 24  PAARASKKIVLPDPSVRSV 42
           PA R + +++   P+ RSV
Sbjct: 970 PATRYTIRVIAEGPAGRSV 988


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.128    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,094
Number of Sequences: 429
Number of extensions: 381
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 65
length of database: 140,377
effective HSP length: 44
effective length of query: 21
effective length of database: 121,501
effective search space:  2551521
effective search space used:  2551521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)