Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005331-TA|BGIBMGA005331-PA|undefined
(392 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939... 31 1.2
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696... 30 2.8
08_01_0378 + 3360215-3360253,3360326-3360437,3362176-3362213,336... 30 2.8
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493... 30 3.7
10_08_0612 - 19228262-19228570,19229955-19230404 29 4.9
07_03_1009 + 23274632-23274841,23274956-23275084,23275207-23275599 29 4.9
02_05_0583 + 30128795-30129158,30129342-30129505,30129602-301296... 29 4.9
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673... 29 6.4
11_06_0460 + 23836034-23836083,23836175-23836318,23836397-238364... 29 6.4
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209... 29 6.4
12_02_0645 + 21475126-21475293,21475386-21475538,21478101-214782... 29 8.5
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277... 29 8.5
01_05_0797 + 25313226-25313330,25313464-25313545,25317573-253176... 29 8.5
>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
16794787-16796964,16797065-16797322,16799815-16800172
Length = 1530
Score = 31.5 bits (68), Expect = 1.2
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 229 SFAGDVIRNIAGGTGKFNLFQDFRKSELITDDELRRFRKVSISLP--------DEA---- 276
S++ D+ + A GT NLF + ++ ++L+ + V I+ P DEA
Sbjct: 975 SWSLDLGKATAHGTNAHNLFGEMSSQGEVSQEDLKISKAVPINSPMNKEEKMMDEALDQI 1034
Query: 277 --KQVHTKIKRRQTGFVRP--EDLERIHIIQKPSFDESSDIDESTTNIGRKVRIS--PTA 330
K K KRR + E + I ++ SF+E+++I ++TT+I S PT+
Sbjct: 1035 LEKLEQMKTKRRCNEKIDQILEKFDEIEANRRKSFEETTNIIKATTSIFNSASSSTPPTS 1094
Query: 331 MSPPTAR 337
+P A+
Sbjct: 1095 PTPVLAK 1101
>09_04_0308 +
16567361-16568854,16568946-16569068,16569372-16569649,
16570316-16571924,16572363-16573781
Length = 1640
Score = 30.3 bits (65), Expect = 2.8
Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 7/112 (6%)
Query: 229 SFAGDVIRNIAGGTGKFNLFQDFRKSELITDDELRRFRKVSISLPDEAKQVHTKIKRRQT 288
S++ D+ + A GT NLF + ++ ++L+ + V I+ P ++ K+
Sbjct: 561 SWSLDLGKATAHGTNAHNLFGEMSSQGEVSQEDLKISKAVPINSPMNKEE---KMMDEAL 617
Query: 289 GFVRPEDLERIHI-IQKPSFDESSDIDESTTNIGRKVRIS--PTAMSPPTAR 337
+ E LE++ ++ SF+E+++I ++TT+I S PT+ +P A+
Sbjct: 618 DQIL-EKLEQMKTKRRRKSFEETTNIIKATTSIFNSASSSTPPTSPTPVLAK 668
>08_01_0378 +
3360215-3360253,3360326-3360437,3362176-3362213,
3363949-3363966,3364629-3364847,3364937-3366727,
3367764-3367827,3367915-3367975,3368685-3368694
Length = 783
Score = 30.3 bits (65), Expect = 2.8
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 250 DFRKSELITDDELRRFRKVSISLPDEAKQVHTKIKRRQTGFVRPEDLERIHIIQKPSFDE 309
D K+ I D EL + S P+E + K+K R+TGF + +R + K +
Sbjct: 681 DLNKNAAIIDQELDTADEPRASFPNELSNL--KLKSRRTGF---KPYKRCSVEAKENRVP 735
Query: 310 SSDIDESTTNIGRKVRISPT 329
+SD E+ G+ V PT
Sbjct: 736 ASDEGETGCQSGKNVFNVPT 755
>06_01_0675 +
4937309-4937354,4937606-4937718,4937810-4937905,
4938003-4938059,4938145-4938300,4938402-4938486,
4938727-4938817,4938896-4939060,4939150-4939345,
4939593-4939731,4940187-4941874,4942575-4942765,
4942850-4942994
Length = 1055
Score = 29.9 bits (64), Expect = 3.7
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 288 TGFVRPEDLERIHIIQKPSFDESSDIDESTTNIGRKVRISPTAMSPPTARESSRRPTAFV 347
TG + P+ L R H S D SS ST+ RISP S A + SR T V
Sbjct: 721 TGSLTPQQLVRSHSALAESGDPSSSTAPSTS------RISP-INSLSRANQGSRNLTDMV 773
Query: 348 -RPSDDNSDTEMRRSVLTRLYEEVTATDEIP 377
P DN E++ R+ ++ + + +P
Sbjct: 774 ATPQIDNLLQEIQSKPDNRIKNDIQSKETVP 804
>10_08_0612 - 19228262-19228570,19229955-19230404
Length = 252
Score = 29.5 bits (63), Expect = 4.9
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 267 KVSISLPDEAKQVHTKIKRRQTGFVRPEDLERIHIIQKPSFDESSDIDESTTNIGRKVRI 326
K+ ++ P E V +++ TG + + + R I+ +PS + +ES N R VR
Sbjct: 152 KIHLNCPGELPDVILQLEE-STGSIAVDQIGRSVILYRPSTSKMKKREESARNRTRFVRS 210
Query: 327 SPTAMSPPTARESSR 341
+ P + S R
Sbjct: 211 REPSEEQPRSSTSKR 225
>07_03_1009 + 23274632-23274841,23274956-23275084,23275207-23275599
Length = 243
Score = 29.5 bits (63), Expect = 4.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 309 ESSDIDESTTNIGRK-VRISPTAMSPPTARESSRRPTAFVRPSDDNSDTEMRRSVLT 364
E+S D TN R+ V + + T E SRR ++ +P +S+ + +R VLT
Sbjct: 172 EASAADAEVTNTPRRPVEARGSGSAATTRMEKSRRMSSSSKPRAPSSNVKRKRRVLT 228
>02_05_0583 +
30128795-30129158,30129342-30129505,30129602-30129665,
30130082-30130215,30130369-30130452,30130580-30130654,
30130734-30130805,30130892-30130965,30131217-30131269,
30131388-30131497,30131824-30131892,30131975-30132049,
30132449-30132508,30132555-30132647,30132718-30132797,
30132877-30132976,30133153-30133590
Length = 702
Score = 29.5 bits (63), Expect = 4.9
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 334 PTARESSRRPTAFVRPSDDNSDTEMRRSVLTRLYEEVTATDE 375
P A ESS P + +D +SD ++ + ++ +++V T+E
Sbjct: 566 PVASESSNVPEEAIEKADPSSDDPQKQPIQSKKHKDVKTTNE 607
>11_06_0684 -
26264540-26264661,26264926-26264989,26267168-26267371,
26268322-26268456,26269174-26269492,26269581-26269631,
26269721-26269864,26270080-26270160,26270252-26270302,
26270392-26270535,26270750-26270833,26270912-26271055,
26271147-26271196
Length = 530
Score = 29.1 bits (62), Expect = 6.4
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 221 IKMNVDRVSFAGDVIRNIAGGTG----KFNLFQDFRKSELITDDELRRFRKVSI 270
+KMN DRVS G++IRN TG N + +EL L R RK+ +
Sbjct: 159 LKMN-DRVSKEGNIIRNKVADTGNPLQSSNFTAEVNSTELARLSRLNRKRKLDL 211
>11_06_0460 +
23836034-23836083,23836175-23836318,23836397-23836480,
23836695-23836838,23836928-23836978,23837070-23837150,
23837366-23837509,23837599-23837649,23837738-23838056,
23839994-23840062,23840378-23840698,23841218-23841583,
23842241-23842304,23842569-23842690
Length = 669
Score = 29.1 bits (62), Expect = 6.4
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 221 IKMNVDRVSFAGDVIRNIAGGTG----KFNLFQDFRKSELITDDELRRFRKVSI 270
+KMN DRVS G++IRN TG N + +EL L R RK+ +
Sbjct: 159 LKMN-DRVSKEGNIIRNKVADTGNPLQSSNFTAEVNSTELARLSRLNRKRKLDL 211
>11_06_0275 -
21818071-21818192,21818457-21818520,21820699-21820902,
21821852-21821986,21822704-21823022,21823111-21823161,
21823251-21823394,21823610-21823690,21823782-21823832,
21823922-21824065,21824280-21824363,21824442-21824585,
21824677-21824726
Length = 530
Score = 29.1 bits (62), Expect = 6.4
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 221 IKMNVDRVSFAGDVIRNIAGGTG----KFNLFQDFRKSELITDDELRRFRKVSI 270
+KMN DRVS G++IRN TG N + +EL L R RK+ +
Sbjct: 159 LKMN-DRVSKEGNIIRNKVADTGNPLQSSNFTAEVNSTELARLSRLNRKRKLDL 211
>12_02_0645 +
21475126-21475293,21475386-21475538,21478101-21478249,
21478449-21478526,21478604-21478697,21478920-21478994,
21479341-21479637,21479722-21479789,21479876-21479930,
21480137-21480275,21480439-21480623,21480748-21481119
Length = 610
Score = 28.7 bits (61), Expect = 8.5
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 270 ISLPDEAKQVHTKIKRRQTGFVRPEDLERIHIIQKPSFDESSDIDESTTNIGRKVRISPT 329
+++P + I+RRQ+G + + I Q + IDES +P
Sbjct: 522 LTVPARSNSSGISIERRQSGSIERKQSGAIERKQSEGIERKQSIDESAGTTATD-NGTPA 580
Query: 330 AMSPPTARESSRRPTAFVRP 349
PP A + S +A +P
Sbjct: 581 NGPPPVANDDSGTSSAPAQP 600
>09_06_0199 +
21526872-21527250,21527431-21527594,21527673-21527736,
21528001-21528134,21528302-21528385,21528526-21528600,
21528683-21528754,21528852-21528925,21529185-21529282,
21529355-21529464,21529794-21529862,21529944-21530018,
21530519-21530611,21530690-21530769,21530877-21530976,
21531150-21531586,21531676-21531706,21532873-21533822,
21533982-21534201
Length = 1102
Score = 28.7 bits (61), Expect = 8.5
Identities = 12/54 (22%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 322 RKVRISPTAMSPP-TARESSRRPTAFVRPSDDNSDTEMRRSVLTRLYEEVTATD 374
R++ ++ +PP A+ + ++ + PS D+S+ E ++ L + E+ + +D
Sbjct: 17 RQLAVAKKGKAPPKAAKRAPKKKQELLEPSSDDSELEQQQERLQEVEEDESGSD 70
>01_05_0797 +
25313226-25313330,25313464-25313545,25317573-25317660,
25318298-25318331,25318399-25319243,25319278-25319371,
25319432-25319611
Length = 475
Score = 28.7 bits (61), Expect = 8.5
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 217 IRKYIKMNVDRVSFAGDVIRNIAGGTGKFNLFQDFRKSEL----ITDDELRRFRKVSISL 272
IRK + RV +GD+ +N+A NL +RK EL I+ E F K +I L
Sbjct: 287 IRKQCNKMISRVGESGDLPKNLAKALSVVNL---YRKQELKCMDISQAEFFPFSKKAIFL 343
Query: 273 PDEAKQVHTKIKRRQTG 289
++ I++ + G
Sbjct: 344 QNDVLNAIWSIQKLKKG 360
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.134 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,871,425
Number of Sequences: 37544
Number of extensions: 378648
Number of successful extensions: 1072
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 14
length of query: 392
length of database: 14,793,348
effective HSP length: 83
effective length of query: 309
effective length of database: 11,677,196
effective search space: 3608253564
effective search space used: 3608253564
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -