Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005331-TA|BGIBMGA005331-PA|undefined
(392 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93385-7|CAB07642.1| 843|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z81083-7|CAB03105.1| 843|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z36719-9|CAH04695.1| 968|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z82282-8|CAB05278.1| 575|Caenorhabditis elegans Hypothetical pr... 29 7.5
Z81050-3|CAB02852.1| 526|Caenorhabditis elegans Hypothetical pr... 29 7.5
U88169-8|AAB42237.1| 866|Caenorhabditis elegans Holocentric chr... 29 7.5
AF321299-1|AAK07638.1| 866|Caenorhabditis elegans CENP-C-like p... 29 7.5
Z77660-3|CAB01171.1| 471|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z46241-4|CAA86318.1| 837|Caenorhabditis elegans Hypothetical pr... 28 9.9
>Z93385-7|CAB07642.1| 843|Caenorhabditis elegans Hypothetical
protein F44F1.7 protein.
Length = 843
Score = 29.1 bits (62), Expect = 5.7
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 297 ERIHIIQKPSFDESSDIDE---STTNIGRKVRISPTAMSPPTARESS 340
+ ++ + +F E+S+I E STTN+ + PT ++P T +ES+
Sbjct: 422 QEVNSLLNNAFVEASEITEENISTTNVESTSQSEPTEVTPETTQESA 468
>Z81083-7|CAB03105.1| 843|Caenorhabditis elegans Hypothetical
protein F44F1.7 protein.
Length = 843
Score = 29.1 bits (62), Expect = 5.7
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 297 ERIHIIQKPSFDESSDIDE---STTNIGRKVRISPTAMSPPTARESS 340
+ ++ + +F E+S+I E STTN+ + PT ++P T +ES+
Sbjct: 422 QEVNSLLNNAFVEASEITEENISTTNVESTSQSEPTEVTPETTQESA 468
>Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 29.1 bits (62), Expect = 5.7
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 254 SELITDDELRRFRKVSISLPDEAKQVHTKIKRRQTGFVRPEDL 296
S+ TD+ RR +V + P+ + ++ RR TG V PEDL
Sbjct: 697 SKFATDEVARRNSQVLSTYPNSGLSI-SRSNRRATGPVNPEDL 738
>Z36719-9|CAH04695.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 29.1 bits (62), Expect = 5.7
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 254 SELITDDELRRFRKVSISLPDEAKQVHTKIKRRQTGFVRPEDL 296
S+ TD+ RR +V + P+ + ++ RR TG V PEDL
Sbjct: 697 SKFATDEVARRNSQVLSTYPNSGLSI-SRSNRRATGPVNPEDL 738
>Z82282-8|CAB05278.1| 575|Caenorhabditis elegans Hypothetical
protein T07G12.11 protein.
Length = 575
Score = 28.7 bits (61), Expect = 7.5
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 35 IDKVFILIEFKRIALLDVXXXXXXXXXXXIGSLRATKRFLKNKQDIEKQLQSNQAENRQN 94
I KVF IEF +A+ D+ IG++ +R+ K K L++ + +N
Sbjct: 508 IQKVFN-IEFDEVAIFDLFQKCFGAHSSIIGNIGKPRRYKKCK----NSLKNTPEVDNEN 562
Query: 95 VDSDN 99
VD D+
Sbjct: 563 VDKDS 567
>Z81050-3|CAB02852.1| 526|Caenorhabditis elegans Hypothetical
protein C50B6.3 protein.
Length = 526
Score = 28.7 bits (61), Expect = 7.5
Identities = 19/112 (16%), Positives = 47/112 (41%)
Query: 252 RKSELITDDELRRFRKVSISLPDEAKQVHTKIKRRQTGFVRPEDLERIHIIQKPSFDESS 311
R+ + T DE+ + + + K+ +++RR D ER+ + ++D
Sbjct: 393 RRKVVKTADEVGLCAPIFVMQSELLKKFREEVQRRYAEGSSASDQERVRNMVYEAYDNIY 452
Query: 312 DIDESTTNIGRKVRISPTAMSPPTARESSRRPTAFVRPSDDNSDTEMRRSVL 363
I+ + N G ++ S + + + R+ F ++ + + E + V+
Sbjct: 453 HINRLSANEGPRILTSDQKLVMQQYKTTFRQGPTFAEETESDVEEEEEKKVV 504
>U88169-8|AAB42237.1| 866|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 7.5
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 293 PEDLERIHIIQKPSFDESSDIDESTTNIGRKVR---ISPTAMSPPTARESSRRPTAFVRP 349
PE+L++ I+K ++SS++ + T + + + T P ESS + T V
Sbjct: 298 PEELQKTVTIEK---NQSSEM-QGTVTVAKDAEHSSLQKTFTKPTEKDESSLQRTFNVAN 353
Query: 350 SDDNSDTEMRRSVLTR---LYEEVTATDEIPGPTL 381
D+N+D+ ++++ + YE+ T + + P L
Sbjct: 354 RDENNDSTLQKTFIIEERDAYEQGTTSVGVKPPVL 388
>AF321299-1|AAK07638.1| 866|Caenorhabditis elegans CENP-C-like
protein HCP-4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 7.5
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 293 PEDLERIHIIQKPSFDESSDIDESTTNIGRKVR---ISPTAMSPPTARESSRRPTAFVRP 349
PE+L++ I+K ++SS++ + T + + + T P ESS + T V
Sbjct: 298 PEELQKTVTIEK---NQSSEM-QGTVTVAKDAEHSSLQKTFTKPTEKDESSLQRTFNVAN 353
Query: 350 SDDNSDTEMRRSVLTR---LYEEVTATDEIPGPTL 381
D+N+D+ ++++ + YE+ T + + P L
Sbjct: 354 RDENNDSTLQKTFIIEERDAYEQGTTSVGVKPPVL 388
>Z77660-3|CAB01171.1| 471|Caenorhabditis elegans Hypothetical
protein F38H4.3 protein.
Length = 471
Score = 28.3 bits (60), Expect = 9.9
Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 20/183 (10%)
Query: 210 ASDDEKEIRKYIKMNVDRVSFAG--DVIRNIAGGT--GKFNLFQDFRKSELI----TDDE 261
A DE E++K +K + + + G + + + G+ + D RK +I ++ +
Sbjct: 160 AEIDENELKKALKKSDEAPALKGRSGISKEMPSGSEDSDVEVEGDNRKMSVIEFIRSEAQ 219
Query: 262 LRRFRKVSISLPDEAKQVHTKIKRRQTGFVRPEDLER-----IHIIQKPSFDESSDIDES 316
+S P +A V + + GF + E + + + DE SD+ +
Sbjct: 220 AETSATISSPAPVKAAPVEGNGEEVENGFTKNEKMSEATQSEMSDSEDEERDEDSDVGKP 279
Query: 317 TTNIGRKVRISPTAMSPPTARESSRRPTAFVRPSDDNSDTEMRRSVLTRLYEEVTATDEI 376
+ +G + + A P A E RR F S D S T EE DEI
Sbjct: 280 ISVVGMSSKTTARAERTPDAEE--RRIREFRELSSDES-----LKGTTEDEEEEIIVDEI 332
Query: 377 PGP 379
P P
Sbjct: 333 PPP 335
>Z46241-4|CAA86318.1| 837|Caenorhabditis elegans Hypothetical
protein C38D4.5 protein.
Length = 837
Score = 28.3 bits (60), Expect = 9.9
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 246 NLFQDFRKSELITDDELRRFRKVSISLPDEAKQVHTKIKRR-----QTGFVRPEDLERIH 300
+L D RKS+LI D+E+ F +V + +++ V R F ED + +
Sbjct: 172 SLADDDRKSQLIEDEEV--FDEVCDDVDEQSSPVIDLQSRPLPIPFSDSFTDDEDEDDVK 229
Query: 301 IIQKPSFDESSDIDESTTNIGRKVRISPTAMSP-PTARESSRRPTAFVRPSDDNSD 355
I+ +S +E RK + M P P A SS + T F R ++++D
Sbjct: 230 PIEGSIASDSDFDEEPVPTSSRKASTASGVMMPHPYAHVSSFQST-FPRAKNEDTD 284
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.134 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,852,867
Number of Sequences: 27539
Number of extensions: 357675
Number of successful extensions: 1316
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1315
Number of HSP's gapped (non-prelim): 11
length of query: 392
length of database: 12,573,161
effective HSP length: 83
effective length of query: 309
effective length of database: 10,287,424
effective search space: 3178814016
effective search space used: 3178814016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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