GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005331-TA|BGIBMGA005331-PA|undefined
         (392 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    27   0.36 
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    27   0.36 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   4.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.8  

>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 26.6 bits (56), Expect = 0.36
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 199 VHLMIFAVESLASDDEKEI--RKYIKMNVDRVSFAGDVIRNIAG 240
           VH +I    S A+D+++ +  RKYI   ++++ F  D +  IAG
Sbjct: 92  VHEIIEQCVSKAADEDECMVARKYIDCALEKMKFLDDELEKIAG 135


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 26.6 bits (56), Expect = 0.36
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 199 VHLMIFAVESLASDDEKEI--RKYIKMNVDRVSFAGDVIRNIAG 240
           VH +I    S A+D+++ +  RKYI   ++++ F  D +  IAG
Sbjct: 92  VHEIIEQCVSKAADEDECMVARKYIDCALEKMKFLDDELEKIAG 135


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 76  NKQDIEKQLQSNQAENRQNVDSDNQ 100
           NKQ+  +Q  + +  NRQN + +NQ
Sbjct: 503 NKQNGNRQNDNKRNGNRQNDNQNNQ 527



 Score = 22.6 bits (46), Expect = 5.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 78  QDIEKQLQSNQAENRQNVDSDN 99
           Q+ + Q   NQ  N QN D+ N
Sbjct: 430 QNADNQNADNQNANNQNADNQN 451



 Score = 22.6 bits (46), Expect = 5.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 65  GSLRATKRFLKNKQDIEKQLQSNQAENRQNVDSDN 99
           G+ +   R   NKQ+  +Q  + Q  NRQN +  N
Sbjct: 457 GNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQN 491



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 76  NKQDIEKQLQSNQAENRQNVDSDN 99
           NKQ+  +Q  + Q +N+QN +  N
Sbjct: 453 NKQNGNRQNDNRQNDNKQNGNRQN 476



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 76  NKQDIEKQLQSNQAENRQNVDSDN 99
           NKQ+  +Q  + Q  NRQN +  N
Sbjct: 478 NKQNGNRQNDNKQNGNRQNGNKQN 501


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 296 LERIHIIQKPSFDESSDIDESTTNIGR 322
           L R  +I++P  DE  + +E    +GR
Sbjct: 345 LPRFLLIERPKKDEDEEEEEEVVVVGR 371


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 10/20 (50%), Positives = 10/20 (50%), Gaps = 1/20 (5%)

Query: 126 VVTNEEKPYYLPLTDVPYPD 145
           V     K YY P  D PYPD
Sbjct: 206 VPAERHKKYY-PCCDEPYPD 224


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,933
Number of Sequences: 429
Number of extensions: 3866
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 14
length of query: 392
length of database: 140,377
effective HSP length: 59
effective length of query: 333
effective length of database: 115,066
effective search space: 38316978
effective search space used: 38316978
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)