GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005330-TA|BGIBMGA005330-PA|IPR010554|Protein of unknown
function DUF1126, IPR006602|Region of unknown function DM10
         (641 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   2.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   4.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   5.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   5.8  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 557 LQVLEKDENCNIYYEDLLKFLDFQTRPVFNLTE 589
           L++ E + +    Y+DLL   +   RPV N TE
Sbjct: 25  LKIFEANPDTKRLYDDLLSNYNRLIRPVMNNTE 57


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 484 RGDPGKEKSPRR-----EMIRSLVFTELTRGLWDDRARLREGLVHADELGTGAVAPERLR 538
           R      K PRR     ++ R++ FT    G    R R++  ++ A E GT  +  E+L 
Sbjct: 431 RDKKSTSKKPRRKFHFKQIARAVKFTSKLFGRALSR-RIKATVLFATETGTSQMYAEKLS 489

Query: 539 QLL 541
           +LL
Sbjct: 490 ELL 492


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 574 LKFLDFQTRPVFNLTEDDYQKVVRHAPPLKDTECKLWAE 612
           L+F    TR  +    D Y+K+ +  PPL      LW E
Sbjct: 273 LRFGCLSTRLFYYQLTDLYKKIKKAVPPLSLHGQLLWRE 311


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 73  VNCDNFTRVFLNRLGINVPDPI 94
           +N D +  + +N  G NVP PI
Sbjct: 174 INFDKYDNIQVNVSGDNVPQPI 195


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.140    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,643
Number of Sequences: 429
Number of extensions: 9804
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 4
length of query: 641
length of database: 140,377
effective HSP length: 62
effective length of query: 579
effective length of database: 113,779
effective search space: 65878041
effective search space used: 65878041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)