GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005329-TA|BGIBMGA005329-PA|IPR007594|RFT1
         (558 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   5.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   5.0  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   6.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   6.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   8.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   8.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 136 ANLALVAQHFCFIKLKIVLDTLHIFVRTLLFLSIIIYDRSLALIAFSI 183
           ANL  +   FC + ++  +    I +  L+    + Y++SLAL AFS+
Sbjct: 278 ANLNFILHLFCLLDVQWRIPFNGIQMPNLM----VFYEKSLALAAFSL 321


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 534 GYENRELVVKMHRKIMN 550
           G  N ELV +MH K+ N
Sbjct: 352 GLRNTELVERMHNKLRN 368


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 195 SYYIFF--YWYVKNKPLYAKGALKSQLIPDAVL 225
           S+Y+ F    Y+K +P+ A G+L+  +I   VL
Sbjct: 464 SHYVAFKSLSYLKKQPVIANGSLEVDVIDGRVL 496


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 12/77 (15%)

Query: 189 IFVVVLSYYIFFYWYVKNKPLYAK--GALKS--QLIPDAVLHKLYEN-------MDDFQF 237
           +F+V+LS  + F W +++ P      GA+K   ++  +   ++ YE        +  F+F
Sbjct: 4   LFLVLLSSLVTFGWTLEDAPRVKTPLGAIKGYYKISGNGKQYEAYEGIPYALPPVGKFRF 63

Query: 238 TSIQEFLPKYLGSISTT 254
            + Q+ +P ++G +S T
Sbjct: 64  KAPQK-IPAWIGELSAT 79


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 12/77 (15%)

Query: 189 IFVVVLSYYIFFYWYVKNKPLYAK--GALKS--QLIPDAVLHKLYEN-------MDDFQF 237
           +F+V+LS  + F W +++ P      GA+K   ++  +   ++ YE        +  F+F
Sbjct: 4   LFLVLLSSLVTFGWTLEDAPRVKTPLGAIKGYYKISGNGKQYEAYEGIPYALPPVGKFRF 63

Query: 238 TSIQEFLPKYLGSISTT 254
            + Q+ +P ++G +S T
Sbjct: 64  KAPQK-IPAWIGELSAT 79


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 316 IEDSSYFYFTQMVSRDLPLHKQDQNKIQES 345
           +E +   YFT++ S ++PL +++     ES
Sbjct: 323 LEFAGVHYFTKVGSGEIPLEEEEWENENES 352


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 16  NILIQILFRCITFIINAWV 34
           N LIQ+   C+  ++ +WV
Sbjct: 215 NFLIQVYGPCVLLVVLSWV 233


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.329    0.142    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,209
Number of Sequences: 429
Number of extensions: 6073
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 8
length of query: 558
length of database: 140,377
effective HSP length: 61
effective length of query: 497
effective length of database: 114,208
effective search space: 56761376
effective search space used: 56761376
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 46 (22.6 bits)