Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005324-TA|BGIBMGA005324-PA|IPR000467|D111/G-patch,
IPR002877|Ribosomal RNA methyltransferase RrmJ/FtsJ
(777 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 46 9e-07
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 29 0.11
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 25 1.8
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 7.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 7.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 7.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 7.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 7.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 7.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 7.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 7.2
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 23 9.5
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 9.5
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 23 9.5
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 46.4 bits (105), Expect = 9e-07
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 18 RMMSNMGYKPGKGLGKFEHGRTEPVEASAQKGRRGLG-LKPSIVGSVPEDFKWTPDESKP 76
+++ MG++PGKGLGK G + PVEA +KGR +G P VPE K +
Sbjct: 164 KLLLQMGFEPGKGLGKQLQGISTPVEAHLRKGRGAIGAYGPEKGPKVPEKKKEDEIDEGK 223
Query: 77 EAKEKV 82
E+K K+
Sbjct: 224 ESKTKL 229
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 29.5 bits (63), Expect = 0.11
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 402 LVPIDIIQEDTEFF-EYVYKSNCILGERQIQNLLKIAAFSKHKILKEI 448
++P D+ D +F E+VY+ + + ++Q+LLK A K K L E+
Sbjct: 76 IMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEV 123
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 25.4 bits (53), Expect = 1.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 25 YKPGKGLGKFEHGRTEPVEA 44
YKPG LG F R+E VEA
Sbjct: 751 YKPGDHLGVFACNRSELVEA 770
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 511 EVEGDLTNFKNVYDWHFMFLSGGKNS 536
E GDL++F +W+ + + G KN+
Sbjct: 146 ETGGDLSDFITNGEWYLIGMPGKKNT 171
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 511 EVEGDLTNFKNVYDWHFMFLSGGKNS 536
E GDL++F +W+ + + G KN+
Sbjct: 146 ETGGDLSDFITNGEWYLIGMPGKKNT 171
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 511 EVEGDLTNFKNVYDWHFMFLSGGKNS 536
E GDL++F +W+ + + G KN+
Sbjct: 146 ETGGDLSDFITNGEWYLIGMPGKKNT 171
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 511 EVEGDLTNFKNVYDWHFMFLSGGKNS 536
E GDL++F +W+ + + G KN+
Sbjct: 146 ETGGDLSDFITNGEWYLIGMPGKKNT 171
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 511 EVEGDLTNFKNVYDWHFMFLSGGKNS 536
E GDL++F +W+ + + G KN+
Sbjct: 146 ETGGDLSDFITNGEWYLIGMPGKKNT 171
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 511 EVEGDLTNFKNVYDWHFMFLSGGKNS 536
E GDL++F +W+ + + G KN+
Sbjct: 146 ETGGDLSDFITNGEWYLIGMPGKKNT 171
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 511 EVEGDLTNFKNVYDWHFMFLSGGKNS 536
E GDL++F +W+ + + G KN+
Sbjct: 214 ETGGDLSDFITNGEWYLIGMPGKKNT 239
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 511 EVEGDLTNFKNVYDWHFMFLSGGKNS 536
E GDL++F +W+ + + G KN+
Sbjct: 214 ETGGDLSDFITNGEWYLIGMPGKKNT 239
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 23.0 bits (47), Expect = 9.5
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 171 DAVCDFVFTNPKKQNGEEVID--KKEILYFADVCAGPGGFSEYILYRRG 217
DA C+ V +P+ + E +ID ++ DV G +E + Y RG
Sbjct: 356 DAFCNIVSCSPQTVHPETIIDVSRRRSSLICDVY----GVNESVSYERG 400
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.0 bits (47), Expect = 9.5
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 394 NSDIDILELVPIDIIQEDTEFFEYVYKSNCILGERQIQNLLKIAAFSKHKILKEIYQAEM 453
N D +LE I T+ E+V + IL ++ +++ ++H L I + +
Sbjct: 381 NGDYVVLETEWSSFINPWTKKLEFVVGQHRILKGPANPDIFRVSCATEHSQLTNISEEVL 440
Query: 454 KE 455
KE
Sbjct: 441 KE 442
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 23.0 bits (47), Expect = 9.5
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 394 NSDIDILELVPIDIIQEDTEFFEYVYKSNCILGERQIQNLLKIAAFSKHKILKEIYQAEM 453
N D +LE I T+ E+V + IL ++ +++ ++H L I + +
Sbjct: 87 NGDYVVLETEWSSFINPWTKKLEFVVGQHRILKGPANPDIFRVSCATEHSQLTNISEEVL 146
Query: 454 KE 455
KE
Sbjct: 147 KE 148
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.319 0.137 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,673
Number of Sequences: 429
Number of extensions: 10473
Number of successful extensions: 27
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 14
length of query: 777
length of database: 140,377
effective HSP length: 63
effective length of query: 714
effective length of database: 113,350
effective search space: 80931900
effective search space used: 80931900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)
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