GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005318-TA|BGIBMGA005318-PA|IPR000372|Leucine-rich
repeat, cysteine-rich flanking region, N-terminal,
IPR001611|Leucine-rich repeat, IPR003591|Leucine-rich repeat, typical
subtype
         (438 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    42   8e-06
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    26   0.54 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   5.1  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   8.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 42.3 bits (95), Expect = 8e-06
 Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 6/116 (5%)

Query: 90  DSTCPKPCVCHTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTGIPKDV-ASX 148
           + TCP  C C+ +   +   VDCSG G+ E P  + +  T + L  N L  +   V    
Sbjct: 758 EMTCPAGCKCYNDRTWNTNAVDCSGLGVEEIPRRIPMDATEVYLDGNVLRELQNHVFIGR 817

Query: 149 XXXXXXXXXXXSIMGLDLGSVSELPGLTVLKLGNNRLIEYPQDLKNGFSLTKLEEL 204
                       I  +   + + L  L +L L +NR+    ++LK GF   +L  L
Sbjct: 818 KNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRI----RELK-GFEFERLSHL 868


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 26.2 bits (55), Expect = 0.54
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 224 KGLRKLTLPSAASSLNEELCNSFKGTLESVCTESC 258
           K LR   + S  S+L  + C++++   E VC E+C
Sbjct: 134 KILRNDRIDSYKSNLKCDKCSTYQSNGEEVCLENC 168


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 311 DTKQTETQKNTEPLQNSQVSLRTAINSA 338
           + +QT  +KN++ L N +VS+    N +
Sbjct: 164 EEEQTINRKNSDYLDNQEVSMENTENKS 191


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 13/66 (19%), Positives = 26/66 (39%)

Query: 294 DESHSAIKPEVAKTAQADTKQTETQKNTEPLQNSQVSLRTAINSAPIATGQTTSTVESNK 353
           D  +  +  E  K  +  T +    ++ E  QNS  + R        + G++    E  +
Sbjct: 238 DRQYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKGRSRDRTERER 297

Query: 354 EKDTDV 359
            K+T +
Sbjct: 298 SKETKI 303


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 13/66 (19%), Positives = 26/66 (39%)

Query: 294 DESHSAIKPEVAKTAQADTKQTETQKNTEPLQNSQVSLRTAINSAPIATGQTTSTVESNK 353
           D  +  +  E  K  +  T +    ++ E  QNS  + R        + G++    E  +
Sbjct: 249 DRQYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKGRSRDRTERER 308

Query: 354 EKDTDV 359
            K+T +
Sbjct: 309 SKETKI 314


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.125    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,767
Number of Sequences: 429
Number of extensions: 3539
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 438
length of database: 140,377
effective HSP length: 60
effective length of query: 378
effective length of database: 114,637
effective search space: 43332786
effective search space used: 43332786
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 45 (22.2 bits)