GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005314-TA|BGIBMGA005314-PA|IPR000210|BTB
         (574 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   1.7  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              24   3.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   3.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   9.1  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 89  DESSAPRRKCLKRAKSSSPKIKNKTQLIRMASKDWSAGVYWEPKSPEWPSIS-QNYSSHS 147
           D S A  +  LK A     KIK   ++        S  +   P+ P  P I+      H 
Sbjct: 99  DVSQAELQSLLKTADQL--KIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHH 156

Query: 148 TR-SPDRSDYGPL---SPYSDGNQSGFSPENKSYSSKRARWDWSPE 189
            R    R+ + P    S + D  +   S EN ++  K    DW PE
Sbjct: 157 PRYKRPRTTFEPRATDSRHYDRYKEEESNENYNWEHKETHIDWQPE 202


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 24 NKTKRVEDTSAETFNSTEGKSTLFARRKAIPDKSEDELKVVIERDNMIVGFVDA 77
          NK +++E   AE  N  + K     + K I DK++++L   ++     VGFV+A
Sbjct: 24 NKLRKIESVCAEE-NGIDLKKADDVK-KGIFDKNDEKLACYVDCMLKKVGFVNA 75


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 46  LFARRKAIPDKSEDELKVVIERDNMIVGFVDAVESDATDSQSEDE 90
           L  R K   D+ E+E  VV+ R+   VG ++A   +A     ED+
Sbjct: 350 LIERPKKDEDEEEEEEVVVVGRNGAGVGAMNA-NGEAVGEVDEDD 393


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 1   MKYEHTYEQHSEILNETSEKKNPNKTKRVE-DTSAETF 37
           +KY HT+E+   +    ++ K+P    R     +++TF
Sbjct: 68  IKYSHTHEKKLVLERSKTKSKSPESRDRSNTSNTSKTF 105


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.128    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,825
Number of Sequences: 429
Number of extensions: 5938
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 574
length of database: 140,377
effective HSP length: 61
effective length of query: 513
effective length of database: 114,208
effective search space: 58588704
effective search space used: 58588704
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)