GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005313-TA|BGIBMGA005313-PA|undefined
         (174 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.8  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 59  NERFLDITLSILGNCCLEEESSLAVGKLNIFGPLTLILKTVCKDSIVG 106
           N+  LD   S +     +E+SS+    L I  P+T+I   +    +VG
Sbjct: 23  NDYILDNYTSPIVEFLQQEDSSIRRDPLYIVLPITVIYAVIFVTGLVG 70


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 26  LKIRSKIIVTEAGVKLFRECRGLE 49
           L +++K+  T +G  LFR   G+E
Sbjct: 448 LSLKNKVETTHSGTSLFRINLGIE 471


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
          opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 5/11 (45%), Positives = 10/11 (90%)

Query: 65 ITLSILGNCCL 75
          + +S++GNCC+
Sbjct: 68 LIMSLVGNCCV 78


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 59  NERFLDITLSILGNC 73
           +ERF  + + ILG+C
Sbjct: 309 SERFEQLRIKILGDC 323


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
          protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 5/11 (45%), Positives = 10/11 (90%)

Query: 65 ITLSILGNCCL 75
          + +S++GNCC+
Sbjct: 68 LIMSLVGNCCV 78


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,213
Number of Sequences: 429
Number of extensions: 1419
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 174
length of database: 140,377
effective HSP length: 54
effective length of query: 120
effective length of database: 117,211
effective search space: 14065320
effective search space used: 14065320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)